JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HK1_chr10_69273496_69406882	0/0	c0024	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0025	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0026	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0027	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0028	2766	1	0	0	0	0	1	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69313847_69406882	0/1	c0001	2754	113	18	24	39	7	24	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	1/0	c0002	2754	52	5	12	31	1	2	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0003	2754	42	8	12	10	5	7	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0004	2754	20	2	8	8	1	1	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0005	2754	14	13	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0006	2754	6	5	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0007	2754	6	6	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0008	2754	5	0	0	3	0	2	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0009	2754	5	5	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0010	2754	4	0	0	4	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0011	2754	4	4	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0012	2754	4	3	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0013	2754	2	2	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0014	2754	2	2	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0015	2754	2	2	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0016	2754	2	2	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0017	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0018	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0019	2754	1	0	0	0	0	1	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0020	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0021	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0022	2754	1	0	0	1	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0023	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0024	2754	1	0	1	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0025	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0026	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0027	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0028	2754	1	0	0	0	0	1	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	c0029	2754	1	1	0	0	0	0	copy fasta	HK1	chr10	69313847	69406882
HK2_chr2_74829127_74898359	0/0	c0001	2754	103	11	17	50	8	17	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	1/0	c0002	2754	89	5	23	49	5	6	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/1	c0003	2754	53	3	11	28	3	7	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0004	2754	46	24	1	21	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0005	2754	17	1	4	7	1	4	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0006	2754	14	3	1	5	1	4	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0007	2754	9	7	1	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0008	2754	8	7	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0009	2754	4	4	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0010	2754	4	3	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0011	2754	3	3	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0012	2754	3	2	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0013	2754	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0014	2754	2	1	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0015	2754	2	0	0	2	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0016	2754	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359