JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HK2_chr2_74829127_74898359	0/0	c0017	2754	2	0	0	2	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0018	2754	2	2	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0019	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0020	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0021	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0022	2754	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0023	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0024	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0025	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0026	2754	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0027	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0028	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0029	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0030	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0031	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0032	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0033	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0034	2754	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0035	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0036	2754	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0037	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0038	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0039	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0040	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0041	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0042	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0043	2754	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0044	2754	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0045	2754	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0046	2754	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	c0047	2754	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK3_chr5_176875869_176904346	1/1	c0001	2772	209	41	35	112	5	14	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0002	2772	105	6	28	49	4	18	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0003	2772	15	15	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0004	2772	9	9	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0005	2772	8	0	1	7	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0006	2772	7	6	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0007	2772	3	3	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0008	2772	3	1	2	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0009	2772	2	0	0	2	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0010	2772	2	0	0	0	2	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0011	2772	2	0	2	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0012	2772	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0013	2772	2	0	0	0	2	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0014	2772	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0015	2772	2	0	0	2	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0016	2772	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0017	2772	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0018	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0019	2772	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346