JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HK3_chr5_176875869_176904346	0/0	c0020	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0021	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0022	2772	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0023	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0024	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0025	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0026	2772	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0027	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0028	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0029	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0030	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0031	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0032	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0033	2772	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0034	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0035	2772	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0036	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0037	2772	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0038	2772	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0039	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0040	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0041	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0042	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0043	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0044	2772	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0045	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0046	2772	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0047	2772	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	c0048	2772	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HKDC1_chr10_69215332_69272552	0/0	c0001	2754	76	6	6	54	1	9	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0002	2754	71	29	19	12	4	7	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0003	2754	67	35	5	21	3	3	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/1	c0004	2754	60	8	17	26	1	7	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0005	2754	29	0	5	19	4	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0006	2754	13	2	0	11	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0007	2754	7	0	4	0	2	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0008	2754	7	0	0	7	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0009	2754	6	0	0	6	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0010	2754	3	0	0	3	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0011	2754	3	3	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0012	2754	3	0	0	0	0	3	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0013	2754	3	0	0	0	0	3	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0014	2754	3	3	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0015	2754	2	2	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	1/0	c0016	2754	2	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0017	2754	2	1	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0018	2754	2	0	0	0	0	2	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0019	2754	2	1	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0020	2754	2	2	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0021	2754	2	0	2	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552