JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKR1B10_chr7_134522567_134546412	0/0	c0016	951	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0017	951	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0018	951	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B15_chr7_134544110_134584869	1/0	c0001	1035	269	53	50	134	7	24	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/1	c0002	1035	108	38	17	35	3	14	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0003	1035	6	0	6	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0004	1035	5	4	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0005	1035	4	0	0	4	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0006	1035	4	0	0	4	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0008	1035	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0009	1035	1	0	0	1	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0010	1035	1	0	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0011	1035	1	0	0	0	0	1	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0012	1035	1	0	0	0	0	1	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0013	1035	1	0	1	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B15_chr7_134544110_134584869	0/0	c0014	1035	1	1	0	0	0	0	copy fasta	AKR1B15	chr7	134544110	134584869
AKR1B1_chr7_134437356_134464100	1/1	c0001	951	429	85	76	202	16	48	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0002	951	10	10	0	0	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0003	951	2	0	1	0	0	1	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0004	951	1	0	1	0	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0005	951	1	0	0	0	0	1	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0006	951	1	0	0	1	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0007	951	1	0	0	1	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1B1_chr7_134437356_134464100	0/0	c0008	951	1	1	0	0	0	0	copy fasta	AKR1B1	chr7	134437356	134464100
AKR1C1_chr10_4958415_4988283	0/1	c0001	972	386	66	69	191	14	45	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0002	972	15	15	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0003	972	5	5	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0004	972	4	3	1	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0005	972	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0006	972	2	2	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0007	972	2	0	1	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0008	972	2	0	1	0	1	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0009	972	2	0	0	2	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0010	972	1	0	0	0	0	1	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0011	972	1	1	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	1/0	c0012	972	1	0	0	0	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0013	972	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0014	972	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C1_chr10_4958415_4988283	0/0	c0015	972	1	0	0	1	0	0	copy fasta	AKR1C1	chr10	4958415	4988283
AKR1C2_chr10_4982775_5008857	1/1	c0001	972	313	46	50	173	9	33	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0002	972	36	14	5	4	4	9	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0003	972	19	3	10	0	3	3	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0004	972	16	13	3	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0005	972	11	11	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0006	972	3	0	2	0	0	1	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0007	972	3	0	3	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0008	972	2	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0009	972	2	2	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0010	972	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857