JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HKDC1_chr10_69215332_69272552	0/0	c0022	2754	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0023	2754	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0024	2754	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0025	2754	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0026	2754	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0027	2754	1	0	0	0	1	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0028	2754	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0029	2754	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0030	2754	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0031	2754	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0032	2754	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0033	2754	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0034	2754	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0035	2754	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	c0036	2754	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HLA-A_chr6_29937532_29950870	0/0	c0001	1098	49	0	6	36	4	3	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0002	1098	45	11	19	14	1	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0003	1098	34	9	0	21	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0004	1098	33	0	3	22	0	8	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0005	1098	25	3	2	16	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	1/0	c0006	1098	22	5	12	2	1	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/1	c0007	1098	21	4	4	5	1	6	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0008	1098	21	0	0	21	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0009	1098	19	2	0	11	3	3	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0010	1098	14	8	5	0	1	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0011	1098	13	11	0	1	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0012	1098	13	0	5	0	1	7	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0013	1098	13	0	0	13	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0014	1098	8	7	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0015	1098	8	7	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0016	1098	7	0	5	0	2	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0017	1098	7	0	5	0	0	2	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0018	1098	6	4	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0019	1098	5	1	0	0	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0020	1098	5	0	0	5	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0021	1098	5	4	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0022	1098	4	3	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0023	1098	4	0	0	4	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0024	1098	4	2	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0025	1098	3	0	0	3	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0026	1098	3	3	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0027	1098	2	0	0	2	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0028	1098	2	2	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0029	1098	2	0	0	2	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0030	1098	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0031	1098	2	0	0	1	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0032	1098	2	1	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0033	1098	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0034	1098	2	1	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0035	1098	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870