JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-A_chr6_29937532_29950870	0/0	c0036	1098	1	1	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0037	1098	1	0	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0038	1098	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0039	1098	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0040	1098	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0041	1098	1	1	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0042	1098	1	0	0	1	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0043	1098	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	c0044	1098	1	0	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-B_chr6_31348875_31362179	0/0	c0001	1089	31	9	4	17	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0002	1089	27	3	6	14	1	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0003	1089	26	0	0	21	0	5	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	1/0	c0004	1089	26	4	7	13	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0005	1089	25	2	5	16	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0006	1089	22	0	4	18	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0007	1089	17	1	2	14	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0008	1089	16	0	1	11	2	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0009	1089	15	0	0	11	0	4	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0010	1089	14	4	4	0	2	4	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0011	1089	13	0	0	13	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0012	1089	12	9	3	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0013	1089	10	3	0	5	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0014	1089	9	0	0	9	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0015	1089	9	1	6	0	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0016	1089	8	4	2	0	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0017	1089	8	1	1	6	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0018	1089	7	0	0	3	1	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0019	1089	7	0	3	1	2	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0020	1089	7	0	0	0	0	7	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0021	1089	7	6	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0022	1089	6	6	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0023	1089	5	3	1	0	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0024	1089	5	3	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/1	c0025	1089	5	0	0	2	0	2	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0026	1089	5	0	0	4	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0027	1089	5	3	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0028	1089	5	0	1	2	2	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0029	1089	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0030	1089	4	0	0	3	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0031	1089	4	0	0	4	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0032	1089	4	3	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0033	1089	4	1	0	1	1	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0034	1089	4	4	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0035	1089	4	4	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0036	1089	4	1	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0037	1089	4	1	3	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0038	1089	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0039	1089	3	0	2	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0040	1089	3	0	0	0	0	3	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0041	1089	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179