JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-B_chr6_31348875_31362179	0/0	c0042	1089	3	3	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0043	1089	3	3	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0044	1089	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0045	1089	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0046	1089	3	0	0	3	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0047	1089	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0048	1089	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0049	1089	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0050	1089	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0051	1089	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0052	1089	2	0	1	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0053	1089	2	0	0	1	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0054	1089	2	0	2	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0055	1089	2	0	0	2	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0056	1089	2	2	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0057	1089	2	0	1	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0058	1089	1	0	0	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0059	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0060	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0061	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0062	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0063	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0064	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0065	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0066	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0067	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0068	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0069	1089	1	0	0	0	0	1	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0070	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0071	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0072	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0073	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0074	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0075	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0076	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0077	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0078	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0079	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0080	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0081	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0082	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0083	1089	1	0	0	0	1	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0084	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0085	1089	1	0	1	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0086	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0087	1089	1	1	0	0	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-B_chr6_31348875_31362179	0/0	c0088	1089	1	0	0	1	0	0	copy fasta	HLA-B	chr6	31348875	31362179
HLA-C_chr6_31263749_31277092	0/0	c0001	1101	52	5	11	31	0	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0002	1101	37	14	11	9	0	3	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0003	1101	36	0	3	27	1	5	copy fasta	HLA-C	chr6	31263749	31277092