JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-C_chr6_31263749_31277092	0/0	c0004	1101	35	3	7	21	2	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0005	1101	34	0	2	30	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0006	1101	25	0	0	20	0	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/1	c0007	1101	23	6	2	7	2	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0008	1101	21	14	5	0	2	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0009	1101	19	0	0	18	0	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0010	1101	18	3	0	13	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0011	1101	16	6	6	0	2	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0012	1101	15	0	6	5	0	4	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0013	1101	13	10	3	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0014	1101	12	3	0	7	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0015	1101	12	1	8	1	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0016	1101	12	0	0	12	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0017	1119	9	9	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0018	1101	8	0	5	1	1	1	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0019	1101	5	1	3	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0020	1101	5	3	2	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0021	1101	5	2	0	2	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0022	1101	5	0	0	0	0	5	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0023	1101	3	0	0	3	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0024	1101	3	3	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0025	1101	3	3	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0026	1101	2	0	2	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0027	1101	2	2	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0028	1101	2	0	1	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0029	1101	2	0	0	0	0	2	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0030	1101	2	1	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0031	1101	2	1	1	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0032	1101	2	0	0	0	2	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0033	1119	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0034	1101	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0035	1101	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0036	1101	1	0	0	1	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0037	1101	1	0	0	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0038	1101	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0039	1101	1	0	0	0	1	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0040	1101	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-C_chr6_31263749_31277092	0/0	c0041	1101	1	1	0	0	0	0	copy fasta	HLA-C	chr6	31263749	31277092
HLA-DMA_chr6_32943618_32958097	0/0	c0001	786	372	81	69	176	16	30	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0002	786	66	3	13	35	1	14	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0003	786	3	0	2	1	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0004	786	1	0	1	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0005	786	1	1	0	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0006	786	1	0	1	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0007	786	1	0	0	0	1	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMA_chr6_32943618_32958097	0/0	c0008	786	1	1	0	0	0	0	copy fasta	HLA-DMA	chr6	32943618	32958097
HLA-DMB_chr6_32929636_32946028	0/0	c0001	792	269	64	60	103	10	32	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/1	c0002	792	119	23	21	63	3	8	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0003	792	50	1	1	43	1	4	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0004	792	5	0	3	0	2	0	copy fasta	HLA-DMB	chr6	32929636	32946028