JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-DMB_chr6_32929636_32946028	0/0	c0005	792	3	0	2	1	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0006	792	2	0	0	2	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0007	792	1	0	1	0	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0008	792	1	0	0	0	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0009	792	1	0	0	0	0	1	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0010	792	1	0	0	1	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DMB_chr6_32929636_32946028	0/0	c0011	792	1	0	0	1	0	0	copy fasta	HLA-DMB	chr6	32929636	32946028
HLA-DOA_chr6_32999182_33014591	0/1	c0001	753	270	46	45	141	8	29	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0002	753	84	1	11	60	5	7	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0003	753	60	18	14	20	1	7	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0004	753	18	11	5	0	2	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0005	753	10	9	1	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0006	753	9	4	3	1	1	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0007	753	7	7	0	0	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0008	753	4	0	0	0	0	4	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0009	753	4	0	3	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0010	753	2	0	0	0	1	1	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0011	753	2	0	0	0	0	2	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOA_chr6_32999182_33014591	0/0	c0012	753	1	0	0	1	0	0	copy fasta	HLA-DOA	chr6	32999182	33014591
HLA-DOB_chr6_32807763_32822002	0/0	c0001	822	284	42	60	146	10	26	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/1	c0002	822	38	18	4	14	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0003	822	34	6	9	8	5	6	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0004	822	28	0	0	22	0	6	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0005	822	22	0	0	21	0	1	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0006	822	13	10	1	2	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0007	822	13	3	9	0	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0008	822	12	2	1	8	1	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0009	822	10	0	2	1	0	7	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0010	822	3	3	0	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0011	822	1	1	0	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DOB_chr6_32807763_32822002	0/0	c0012	822	1	1	0	0	0	0	copy fasta	HLA-DOB	chr6	32807763	32822002
HLA-DPA1_chr6_33059569_33078649	0/1	c0001	783	90	9	36	24	10	10	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	c0002	783	11	8	3	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	c0003	783	2	1	1	0	0	0	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	c0004	783	1	0	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPA1_chr6_33059569_33078649	0/0	c0005	783	1	0	0	0	0	1	copy fasta	HLA-DPA1	chr6	33059569	33078649
HLA-DPB1_chr6_33070990_33094696	0/0	c0001	777	87	0	3	84	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0002	777	70	13	9	43	1	4	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/1	c0003	777	53	4	19	9	7	13	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0004	777	43	1	15	16	3	8	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0005	777	36	30	3	0	2	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0006	777	23	0	0	20	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0007	777	19	14	5	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0008	777	17	0	2	13	2	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0009	776	14	3	3	5	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0010	777	13	0	6	2	0	5	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0011	777	11	0	3	8	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0012	776	10	3	5	0	2	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0013	777	9	2	0	4	0	3	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0014	777	8	8	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696