JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-DPB1_chr6_33070990_33094696	0/0	c0015	777	6	3	0	2	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0016	777	5	4	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0017	777	3	3	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0018	776	3	3	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0019	776	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0020	777	2	1	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0021	777	2	0	0	2	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0022	777	2	0	1	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0023	777	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0024	777	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0025	776	1	0	0	1	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0026	777	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0027	777	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0028	777	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0029	777	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0030	777	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0031	777	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0032	777	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0033	777	1	0	1	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0034	777	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0035	776	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0036	777	1	0	0	0	1	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0037	776	1	0	0	0	0	1	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0038	776	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DPB1_chr6_33070990_33094696	0/0	c0039	777	1	1	0	0	0	0	copy fasta	HLA-DPB1	chr6	33070990	33094696
HLA-DQA1_chr6_32632406_32648684	1/0	c0001	768	46	15	5	17	2	6	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	c0002	768	25	3	4	14	0	4	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	c0003	768	5	0	0	5	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	c0004	768	5	0	2	3	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	c0005	768	2	0	1	1	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/0	c0006	768	2	2	0	0	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA1_chr6_32632406_32648684	0/1	c0007	768	1	0	0	0	0	0	copy fasta	HLA-DQA1	chr6	32632406	32648684
HLA-DQA2_chr6_32736391_32752198	0/1	c0001	768	201	15	29	132	5	19	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0002	768	114	32	26	47	5	4	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0003	768	32	0	0	25	0	7	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0004	768	30	6	8	6	2	8	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0005	768	18	3	12	0	3	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0006	768	15	2	1	6	0	6	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0007	768	13	12	1	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0008	768	12	11	1	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0009	768	11	7	4	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0010	768	4	3	0	0	1	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0011	768	2	2	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0012	768	1	1	0	0	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0013	768	1	0	0	1	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQA2_chr6_32736391_32752198	0/0	c0014	768	1	0	0	1	0	0	copy fasta	HLA-DQA2	chr6	32736391	32752198
HLA-DQB1_chr6_32654467_32671657	0/0	c0001	786	52	0	11	36	1	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/1	c0002	786	50	9	9	25	5	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0003	786	45	0	0	36	0	9	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0004	786	43	5	15	20	0	3	copy fasta	HLA-DQB1	chr6	32654467	32671657