JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-DQB1_chr6_32654467_32671657	1/0	c0005	786	40	15	6	15	2	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0006	786	40	13	8	15	2	2	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0007	786	21	4	1	14	1	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0008	786	19	3	9	1	3	3	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0009	786	17	3	4	9	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0010	786	17	0	0	17	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0011	786	16	1	1	10	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0012	786	11	10	1	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0013	786	11	1	0	6	0	4	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0014	786	10	3	5	1	0	1	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0015	786	6	1	1	4	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0016	786	1	1	0	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0017	786	1	1	0	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0018	786	1	0	1	0	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB1_chr6_32654467_32671657	0/0	c0019	786	1	0	0	1	0	0	copy fasta	HLA-DQB1	chr6	32654467	32671657
HLA-DQB2_chr6_32751098_32768532	0/1	c0001	795	299	54	55	148	10	31	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0002	795	68	12	16	34	3	3	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0003	795	34	13	9	8	2	2	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0004	795	34	0	0	27	0	7	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0005	795	6	6	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0006	795	5	0	0	2	0	3	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0007	795	3	3	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0008	795	2	2	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0009	795	2	1	0	0	1	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0010	795	1	0	0	1	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DQB2_chr6_32751098_32768532	0/0	c0011	795	1	1	0	0	0	0	copy fasta	HLA-DQB2	chr6	32751098	32768532
HLA-DRA_chr6_32434887_32450046	0/1	c0001	765	282	54	60	127	8	32	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	c0002	765	141	30	17	82	5	7	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	c0003	765	19	5	0	14	0	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	c0004	765	11	3	5	0	2	1	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	c0005	765	5	0	0	1	0	4	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRA_chr6_32434887_32450046	0/0	c0006	765	1	0	0	0	1	0	copy fasta	HLA-DRA	chr6	32434887	32450046
HLA-DRB1_chr6_32573775_32594848	0/0	c0001	801	20	0	0	18	0	2	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0002	801	19	3	9	0	4	3	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0003	801	19	5	2	10	1	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0004	801	17	0	1	10	2	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0005	801	12	8	4	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0006	801	11	0	1	9	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0007	801	10	9	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0008	801	9	2	2	2	2	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0009	801	8	0	1	6	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0010	801	8	6	2	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0011	801	6	5	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0012	801	6	6	0	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0013	801	6	0	0	5	0	1	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0014	801	5	2	2	1	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0015	801	5	1	0	3	1	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0016	801	5	4	1	0	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0017	801	4	0	0	0	0	4	copy fasta	HLA-DRB1	chr6	32573775	32594848
HLA-DRB1_chr6_32573775_32594848	0/0	c0018	801	4	0	0	4	0	0	copy fasta	HLA-DRB1	chr6	32573775	32594848