JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLA-G_chr6_29822825_29836021	0/0	c0008	1016	12	10	0	1	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0009	1017	4	4	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0010	1017	2	0	0	2	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0011	1017	2	0	0	0	0	2	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0012	1017	2	0	2	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0013	1017	1	0	1	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0014	1017	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0015	1017	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0016	1017	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0017	1017	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0018	1017	1	0	0	0	0	1	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0019	1017	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0020	1017	1	1	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0021	1017	1	0	1	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0022	1017	1	1	0	0	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLA-G_chr6_29822825_29836021	0/0	c0023	1017	1	0	0	1	0	0	copy fasta	HLA-G	chr6	29822825	29836021
HLCS_chr21_36743626_36971669	1/1	c0001	2622	202	51	49	70	8	22	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0002	2622	18	12	1	4	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0003	2622	10	1	3	3	2	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0004	2622	8	7	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0005	2622	4	3	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0006	2622	2	2	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0007	2622	2	1	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0008	2622	1	0	0	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0009	2622	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0010	2622	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0011	2622	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0012	2622	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0013	2622	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0014	2622	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0015	2622	1	0	0	0	0	1	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0016	2622	1	0	0	1	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0017	2622	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0018	2622	1	1	0	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLCS_chr21_36743626_36971669	0/0	c0019	2292	1	0	1	0	0	0	copy fasta	HLCS	chr21	36743626	36971669
HLF_chr17_55259960_55330187	1/1	c0001	888	399	90	74	171	16	46	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	c0002	888	3	3	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	c0003	888	3	3	0	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	c0004	888	2	0	2	0	0	0	copy fasta	HLF	chr17	55259960	55330187
HLF_chr17_55259960_55330187	0/0	c0005	888	1	0	0	1	0	0	copy fasta	HLF	chr17	55259960	55330187
HLTF_chr3_149025127_149091533	0/0	c0001	3030	123	26	15	65	6	11	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0002	3030	112	20	23	57	3	9	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	1/1	c0003	3030	97	11	10	47	6	21	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0004	3030	15	0	2	10	2	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0005	3030	13	12	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0006	3030	8	8	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0007	3030	6	1	4	0	1	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0008	3030	5	4	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0009	3030	4	0	3	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0010	3030	4	4	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533