JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HLTF_chr3_149025127_149091533	0/0	c0011	3030	2	0	0	2	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0012	3030	2	2	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0013	3030	2	2	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0014	3030	2	0	2	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0015	3030	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0016	3030	1	0	0	1	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0017	3030	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0018	3030	1	0	0	1	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0019	3030	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0020	3030	1	0	1	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0021	3030	1	1	0	0	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0022	3030	1	0	0	0	0	1	copy fasta	HLTF	chr3	149025127	149091533
HLTF_chr3_149025127_149091533	0/0	c0023	3030	1	0	0	1	0	0	copy fasta	HLTF	chr3	149025127	149091533
HLX_chr1_220874443_220890059	1/1	c0001	1467	198	29	33	111	5	18	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0002	1467	95	15	16	46	3	15	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0003	1467	91	27	16	38	2	8	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0004	1467	13	13	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0005	1482	12	0	0	12	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0006	1467	12	3	8	0	1	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0007	1467	6	0	3	0	3	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0008	1482	3	0	2	0	0	1	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0009	1467	2	2	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0010	1467	1	0	0	1	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0012	1467	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0013	1467	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0014	1467	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HLX_chr1_220874443_220890059	0/0	c0015	1467	1	1	0	0	0	0	copy fasta	HLX	chr1	220874443	220890059
HM13_chr20_31509442_31574543	1/1	c0001	1281	199	76	53	46	10	12	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	c0002	1281	2	1	1	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HM13_chr20_31509442_31574543	0/0	c0003	1281	1	1	0	0	0	0	copy fasta	HM13	chr20	31509442	31574543
HMBOX1_chr8_28885395_29058262	1/1	c0001	1263	343	90	49	158	12	32	copy fasta	HMBOX1	chr8	28885395	29058262
HMBOX1_chr8_28885395_29058262	0/0	c0002	1263	1	0	1	0	0	0	copy fasta	HMBOX1	chr8	28885395	29058262
HMBS_chr11_119079881_119098549	1/1	c0001	1086	361	83	58	173	12	33	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0002	1086	75	14	19	28	2	12	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0003	1086	3	1	2	0	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0004	1086	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0005	1086	1	0	1	0	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0006	1086	1	0	0	0	0	1	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMBS_chr11_119079881_119098549	0/0	c0008	1086	1	0	0	1	0	0	copy fasta	HMBS	chr11	119079881	119098549
HMCES_chr3_129273870_129311186	1/1	c0001	1065	303	79	74	108	8	32	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0002	1065	27	1	0	21	0	5	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0004	1065	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0005	1065	1	0	0	0	0	1	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0008	1065	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186