JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKR1C2_chr10_4982775_5008857	0/0	c0011	972	1	0	1	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0012	972	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0013	972	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0014	972	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0015	972	1	0	0	1	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C2_chr10_4982775_5008857	0/0	c0016	972	1	1	0	0	0	0	copy fasta	AKR1C2	chr10	4982775	5008857
AKR1C3_chr10_5089414_5112686	0/0	c0001	972	265	34	35	159	8	29	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	1/0	c0002	972	49	2	13	26	2	5	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/1	c0003	972	45	25	12	0	2	5	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0004	972	27	0	11	16	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0005	972	14	5	5	0	4	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0006	972	9	8	1	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0007	972	9	8	1	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0008	972	8	8	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0009	972	4	0	0	4	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0010	972	3	3	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0011	972	2	2	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0012	972	1	0	0	1	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0013	972	1	1	0	0	0	0	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C3_chr10_5089414_5112686	0/0	c0014	972	1	0	0	0	0	1	copy fasta	AKR1C3	chr10	5089414	5112686
AKR1C4_chr10_5191837_5223949	0/1	c0001	972	347	70	57	176	13	30	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0002	972	43	0	18	18	2	5	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0003	972	22	8	3	4	3	4	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0004	972	9	8	1	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0005	972	6	0	0	6	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0006	972	3	2	1	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0007	972	1	0	0	0	0	1	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	1/0	c0008	972	1	0	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0009	972	1	1	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C4_chr10_5191837_5223949	0/0	c0010	972	1	1	0	0	0	0	copy fasta	AKR1C4	chr10	5191837	5223949
AKR1C8_chr10_5148920_5190150	0/0	c0001	981	179	35	21	105	2	16	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	1/0	c0002	981	100	14	27	39	8	11	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/1	c0003	981	43	22	11	0	2	7	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0004	919	36	0	9	24	0	3	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0005	981	30	19	6	0	4	1	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0006	919	7	0	3	0	2	2	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0007	981	3	3	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0008	981	2	2	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0009	981	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0010	981	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0011	981	1	0	0	1	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0012	981	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0013	981	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0014	981	1	0	1	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0015	981	1	0	0	1	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1C8_chr10_5148920_5190150	0/0	c0016	981	1	1	0	0	0	0	copy fasta	AKR1C8	chr10	5148920	5190150
AKR1D1_chr7_138071459_138123305	1/1	c0001	981	414	91	68	193	16	44	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0002	981	5	5	0	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0003	981	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0004	981	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305