JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMCES_chr3_129273870_129311186	0/0	c0010	1065	1	1	0	0	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCES_chr3_129273870_129311186	0/0	c0011	1065	1	0	0	1	0	0	copy fasta	HMCES	chr3	129273870	129311186
HMCN1_chr1_185729391_186195949	0/0	c0001	16908	15	8	4	3	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0002	16908	6	5	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0003	16908	4	0	2	0	0	2	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0004	16908	4	4	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0005	16908	3	2	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0006	16908	3	0	1	0	1	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0007	16908	3	3	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0008	16908	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0009	16908	2	1	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0010	16908	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0011	16908	2	2	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0012	16908	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0013	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0014	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0015	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0016	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0017	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0018	16908	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0019	16908	1	0	0	1	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0020	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0021	16908	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0022	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0023	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0024	16908	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0025	16908	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0026	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0027	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0028	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0029	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0030	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0031	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0032	16908	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0033	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0034	16908	1	0	0	1	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0035	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0036	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0037	16908	1	0	0	0	1	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0038	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	1/0	c0039	16908	1	0	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0040	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0041	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0042	16908	1	0	0	0	0	1	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0043	16908	1	0	0	1	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0044	16908	1	0	1	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0045	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0046	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0047	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0048	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949