JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMCN1_chr1_185729391_186195949	0/1	c0049	16908	1	0	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0050	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0051	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0052	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0053	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0054	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0055	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0056	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN1_chr1_185729391_186195949	0/0	c0057	16908	1	1	0	0	0	0	copy fasta	HMCN1	chr1	185729391	186195949
HMCN2_chr9_130260760_130439123	0/0	c0001	15234	5	0	1	2	0	2	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0002	15234	4	0	1	3	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0003	15234	3	0	0	2	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0004	15234	3	0	0	2	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0005	15240	3	0	0	2	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0006	15234	2	0	1	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0007	15234	2	0	0	2	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0008	15234	2	0	0	2	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0009	15234	2	0	1	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0010	15234	2	0	2	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0011	15234	2	0	1	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0012	15234	2	0	0	2	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0013	15234	2	0	1	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0014	15234	2	1	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0015	15234	2	0	0	2	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0016	15234	2	0	0	2	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0017	15234	2	0	2	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0018	15234	2	2	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0019	15234	2	2	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0020	15234	2	0	1	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0021	15240	2	0	2	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0022	15240	2	0	1	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0023	15240	2	2	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0024	15240	2	2	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0025	15240	2	0	0	0	2	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0026	15240	2	0	2	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0027	15240	2	0	1	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0028	15240	2	0	2	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0029	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0030	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0031	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0032	15234	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0033	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0034	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0035	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0036	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0037	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0038	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0039	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0040	15234	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0041	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123