JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMCN2_chr9_130260760_130439123	0/0	c0092	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0093	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0094	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0095	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0096	15234	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0097	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0098	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0099	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0100	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0101	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0102	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0103	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0104	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0105	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0106	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0107	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0108	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0109	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0110	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0111	15234	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0112	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0113	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0114	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0115	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0116	15234	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0117	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0118	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0119	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0120	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0121	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0122	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0123	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0124	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0125	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0126	15234	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0127	15234	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0128	15234	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0129	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0130	15234	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0131	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0132	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0133	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0134	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0135	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0136	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0137	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0138	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0139	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0140	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0141	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123