JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMCN2_chr9_130260760_130439123	0/0	c0192	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0193	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0194	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0195	15240	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0196	15240	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0197	15240	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0198	15240	1	0	0	1	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0199	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0200	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0201	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0202	15240	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0203	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0204	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0205	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0206	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0207	15240	1	0	0	0	0	1	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0208	15240	1	0	0	0	1	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0209	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0210	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	1/0	c0211	15240	1	0	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0212	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0213	15240	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0214	15240	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0215	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0216	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0217	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0218	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0219	15234	1	0	1	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0220	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0221	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMCN2_chr9_130260760_130439123	0/0	c0222	15234	1	1	0	0	0	0	copy fasta	HMCN2	chr9	130260760	130439123
HMG20A_chr15_77415888_77490603	1/1	c0001	1044	366	74	70	166	14	40	copy fasta	HMG20A	chr15	77415888	77490603
HMG20B_chr19_3567944_3584083	1/1	c0001	954	385	90	77	154	16	46	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0002	955	14	2	3	8	0	1	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0003	954	1	0	0	1	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0004	954	1	0	0	0	0	1	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0005	954	1	1	0	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0006	954	1	1	0	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0007	954	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0008	954	1	0	1	0	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMG20B_chr19_3567944_3584083	0/0	c0009	954	1	0	0	1	0	0	copy fasta	HMG20B	chr19	3567944	3584083
HMGA1_chr6_34231873_34251231	1/1	c0001	324	314	84	68	114	14	32	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	c0002	324	7	7	0	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA1_chr6_34231873_34251231	0/0	c0003	324	1	1	0	0	0	0	copy fasta	HMGA1	chr6	34231873	34251231
HMGA2_chr12_65819483_65971291	1/1	c0001	330	235	64	36	95	8	30	copy fasta	HMGA2	chr12	65819483	65971291
HMGA2_chr12_65819483_65971291	0/0	c0002	330	1	0	0	1	0	0	copy fasta	HMGA2	chr12	65819483	65971291
HMGB1_chr13_30451704_30470936	0/1	c0001	648	306	26	75	156	11	37	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	c0002	648	37	34	0	0	1	2	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	0/0	c0003	648	27	25	2	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936
HMGB1_chr13_30451704_30470936	1/0	c0004	648	13	11	1	0	0	0	copy fasta	HMGB1	chr13	30451704	30470936