JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMGB1_chr13_30451704_30470936	0/0	c0005	648	1	0	0	0	0	1	copy fasta	HMGB1	chr13	30451704	30470936
HMGB2_chr4_173326376_173339358	1/1	c0001	630	367	98	67	145	14	41	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	c0002	630	1	0	0	0	0	1	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	c0003	630	1	0	1	0	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB2_chr4_173326376_173339358	0/0	c0004	630	1	0	0	1	0	0	copy fasta	HMGB2	chr4	173326376	173339358
HMGB3_chrX_150978335_150995771	1/1	c0001	603	326	80	61	141	12	30	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	c0002	603	2	1	0	0	1	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	c0003	602	1	0	0	1	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB3_chrX_150978335_150995771	0/0	c0004	603	1	1	0	0	0	0	copy fasta	HMGB3	chrX	150978335	150995771
HMGB4_chr1_33859079_33869791	0/0	c0001	561	359	87	64	158	9	41	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0002	561	26	0	6	13	4	3	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0003	561	4	4	0	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/1	c0004	561	4	3	0	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0005	561	3	0	0	3	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0006	561	2	0	1	0	0	1	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	1/0	c0007	561	2	0	0	0	1	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0008	561	1	0	0	0	0	1	copy fasta	HMGB4	chr1	33859079	33869791
HMGB4_chr1_33859079_33869791	0/0	c0009	561	1	0	1	0	0	0	copy fasta	HMGB4	chr1	33859079	33869791
HMGCLL1_chr6_55429373_55584192	1/1	c0001	1023	330	72	56	152	12	36	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	c0002	1023	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	c0003	1023	1	0	0	1	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	c0004	1023	1	1	0	0	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCLL1_chr6_55429373_55584192	0/0	c0005	1023	1	0	0	1	0	0	copy fasta	HMGCLL1	chr6	55429373	55584192
HMGCL_chr1_23796885_23830429	0/1	c0001	978	313	81	57	131	15	28	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	1/0	c0002	978	54	2	12	32	1	6	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	0/0	c0003	978	3	0	0	3	0	0	copy fasta	HMGCL	chr1	23796885	23830429
HMGCL_chr1_23796885_23830429	0/0	c0004	978	2	1	1	0	0	0	copy fasta	HMGCL	chr1	23796885	23830429
HMGCR_chr5_75332220_75367101	1/1	c0001	2667	380	88	72	176	8	34	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	c0002	2667	5	0	0	5	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	c0003	2667	2	2	0	0	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	c0004	2667	2	0	0	2	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCR_chr5_75332220_75367101	0/0	c0005	2667	1	0	0	1	0	0	copy fasta	HMGCR	chr5	75332220	75367101
HMGCS1_chr5_43282470_43318412	1/1	c0001	1563	176	73	27	57	3	14	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	c0002	1563	105	17	30	39	4	15	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	c0003	1563	16	0	1	14	0	1	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	c0004	1563	13	2	6	0	1	4	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS1_chr5_43282470_43318412	0/0	c0005	1563	2	0	0	2	0	0	copy fasta	HMGCS1	chr5	43282470	43318412
HMGCS2_chr1_119743002_119773905	1/1	c0001	1527	428	91	78	198	18	41	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0002	1527	1	0	0	1	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0003	1527	1	0	0	1	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0004	1527	1	1	0	0	0	0	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0005	1527	1	0	0	0	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0006	1527	1	0	0	0	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGCS2_chr1_119743002_119773905	0/0	c0007	1527	1	0	0	0	0	1	copy fasta	HMGCS2	chr1	119743002	119773905
HMGN1_chr21_39337315_39354088	1/1	c0001	303	395	86	77	167	18	45	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	c0002	303	18	6	5	5	0	2	copy fasta	HMGN1	chr21	39337315	39354088
HMGN1_chr21_39337315_39354088	0/0	c0003	303	1	0	0	0	0	1	copy fasta	HMGN1	chr21	39337315	39354088
HMGN2_chr1_26467440_26481642	1/1	c0001	273	390	92	80	154	18	44	copy fasta	HMGN2	chr1	26467440	26481642
HMGN3_chr6_79196245_79239682	1/1	c0001	393	322	94	64	112	12	38	copy fasta	HMGN3	chr6	79196245	79239682
HMGN4_chr6_26533366_26551933	0/0	c0001	273	225	55	37	102	9	22	copy fasta	HMGN4	chr6	26533366	26551933