JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMGN4_chr6_26533366_26551933	1/1	c0002	273	167	35	37	68	7	18	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	c0003	273	3	3	0	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN4_chr6_26533366_26551933	0/0	c0004	273	1	1	0	0	0	0	copy fasta	HMGN4	chr6	26533366	26551933
HMGN5_chrX_81108699_81206913	1/1	c0001	849	212	57	36	89	6	22	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	c0002	849	7	6	1	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	c0003	849	2	2	0	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	c0004	849	2	0	0	2	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	c0005	849	1	0	0	0	1	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGN5_chrX_81108699_81206913	0/0	c0006	849	1	1	0	0	0	0	copy fasta	HMGN5	chrX	81108699	81206913
HMGXB3_chr5_149995739_150058128	0/1	c0001	3879	123	21	26	55	3	17	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	1/0	c0002	3879	96	0	16	58	3	18	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0003	3879	52	48	3	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0004	3879	39	4	15	18	2	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0005	3879	28	8	1	16	0	3	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0006	3879	8	5	3	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0007	3879	5	0	4	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0008	3879	4	1	1	1	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0009	3879	3	3	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0010	3879	3	0	0	3	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0011	3879	2	2	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0012	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0013	3879	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0014	3879	1	0	1	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0015	3879	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0016	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0017	3879	1	0	0	0	1	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0018	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0019	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0020	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0021	3879	1	1	0	0	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0022	3879	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0023	3879	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0024	3879	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0025	3879	1	0	0	0	1	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0026	3879	1	0	0	0	0	1	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0027	3879	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB3_chr5_149995739_150058128	0/0	c0028	3879	1	0	0	1	0	0	copy fasta	HMGXB3	chr5	149995739	150058128
HMGXB4_chr22_35252493_35300807	1/0	c0001	1806	209	63	27	97	5	16	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/1	c0002	1806	132	10	25	69	5	22	copy fasta	HMGXB4	chr22	35252493	35300807
HMGXB4_chr22_35252493_35300807	0/0	c0003	1806	1	1	0	0	0	0	copy fasta	HMGXB4	chr22	35252493	35300807
HMHB1_chr5_143807161_143825716	1/1	c0001	126	292	69	53	128	9	31	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	c0002	126	165	29	28	92	3	13	copy fasta	HMHB1	chr5	143807161	143825716
HMHB1_chr5_143807161_143825716	0/0	c0003	126	1	0	1	0	0	0	copy fasta	HMHB1	chr5	143807161	143825716
HMMR_chr5_163455632_163496941	1/1	c0001	2178	210	53	39	80	10	26	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0002	2178	61	1	3	57	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0003	2178	41	15	9	12	1	4	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0004	2178	25	9	9	2	0	5	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0005	2178	18	0	1	15	0	2	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0006	2178	8	0	5	0	0	3	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0007	2178	7	0	4	0	0	3	copy fasta	HMMR	chr5	163455632	163496941