JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMMR_chr5_163455632_163496941	0/0	c0008	2178	6	0	0	6	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0009	2178	5	3	2	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0010	2178	4	4	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0011	2178	3	3	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0012	2178	3	0	0	1	1	1	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0013	2178	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0014	2178	2	0	2	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0015	2178	2	2	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0016	2178	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0017	2178	1	0	1	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0018	2178	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0019	2178	1	0	1	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0020	2178	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0021	2178	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0022	2178	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0023	2178	1	1	0	0	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMMR_chr5_163455632_163496941	0/0	c0024	2178	1	0	0	1	0	0	copy fasta	HMMR	chr5	163455632	163496941
HMOX1_chr22_35376096_35399207	1/1	c0001	867	354	68	62	167	16	39	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0002	867	17	3	0	14	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0003	867	4	4	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0004	867	2	2	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0005	867	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0006	867	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0007	867	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0008	867	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0009	867	1	0	0	0	0	1	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0010	867	1	0	0	1	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX1_chr22_35376096_35399207	0/0	c0011	867	1	1	0	0	0	0	copy fasta	HMOX1	chr22	35376096	35399207
HMOX2_chr16_4471398_4515347	0/0	c0001	951	282	72	44	125	3	38	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/1	c0002	951	26	17	6	1	1	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	c0003	951	2	2	0	0	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	c0004	951	1	0	0	1	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	c0005	951	1	0	0	1	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMOX2_chr16_4471398_4515347	0/0	c0006	951	1	1	0	0	0	0	copy fasta	HMOX2	chr16	4471398	4515347
HMSD_chr18_63944301_63966835	1/1	c0001	420	392	84	68	190	12	36	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	c0002	420	7	5	2	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	c0003	404	4	4	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMSD_chr18_63944301_63966835	0/0	c0004	420	1	1	0	0	0	0	copy fasta	HMSD	chr18	63944301	63966835
HMX1_chr4_8862048_8876839	0/0	c0001	1047	330	38	69	174	16	33	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0002	1047	40	28	7	0	2	3	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0003	1047	30	24	2	2	0	2	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0004	1047	16	4	4	2	0	6	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0005	1047	2	0	0	0	0	2	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0006	1047	2	2	0	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0007	1047	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0010	1047	1	0	1	0	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0011	1047	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0012	1047	1	0	1	0	0	0	copy fasta	HMX1	chr4	8862048	8876839