JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HMX1_chr4_8862048_8876839	0/0	c0013	1047	1	0	0	1	0	0	copy fasta	HMX1	chr4	8862048	8876839
HMX1_chr4_8862048_8876839	0/0	c0014	1047	1	0	0	0	0	1	copy fasta	HMX1	chr4	8862048	8876839
HMX2_chr10_123143136_123155672	1/1	c0001	822	438	90	75	206	16	49	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0002	822	5	4	1	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0003	822	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0004	822	1	0	0	0	0	1	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0005	822	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0006	822	1	0	0	1	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX2_chr10_123143136_123155672	0/0	c0007	822	1	1	0	0	0	0	copy fasta	HMX2	chr10	123143136	123155672
HMX3_chr10_123130970_123144423	1/1	c0001	1074	386	88	77	159	16	44	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0002	1074	49	0	3	45	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0003	1074	13	0	0	12	0	1	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0004	1074	6	6	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0005	1074	4	0	4	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0006	1074	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0007	1074	2	2	0	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0008	1074	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HMX3_chr10_123130970_123144423	0/0	c0009	1074	1	0	1	0	0	0	copy fasta	HMX3	chr10	123130970	123144423
HNF1A_chr12_120973543_121007512	0/0	c0001	1896	152	43	11	79	4	15	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/1	c0002	1896	113	4	21	74	4	9	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0003	1896	35	19	7	1	2	6	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0004	1896	27	13	10	0	3	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0005	1896	23	0	1	21	0	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0006	1896	9	0	8	0	1	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	1/0	c0007	1896	8	7	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0008	1896	8	2	2	2	1	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0009	1897	5	2	3	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0010	1896	5	0	0	5	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0011	1896	3	0	0	3	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0012	1896	3	0	0	3	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0013	1896	3	3	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0014	1897	2	0	2	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0015	1896	2	0	2	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0016	1869	2	0	2	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0017	1896	1	0	0	0	1	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0018	1896	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0019	1896	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0020	1886	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0021	1896	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0022	1896	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0023	1896	1	1	0	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0024	1896	1	0	0	0	0	1	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0025	1896	1	0	0	1	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1A_chr12_120973543_121007512	0/0	c0026	1896	1	0	1	0	0	0	copy fasta	HNF1A	chr12	120973543	121007512
HNF1B_chr17_37681431_37750059	0/1	c0001	1674	400	89	67	181	18	44	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	c0002	1674	2	2	0	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	c0003	1674	2	1	1	0	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	c0004	1674	2	0	0	0	0	2	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	c0005	1674	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF1B_chr17_37681431_37750059	0/0	c0006	1674	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059