JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKR1D1_chr7_138071459_138123305	0/0	c0005	981	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0006	981	1	0	1	0	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0007	981	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0008	981	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1D1_chr7_138071459_138123305	0/0	c0009	981	1	0	0	1	0	0	copy fasta	AKR1D1	chr7	138071459	138123305
AKR1E2_chr10_4821207_4853062	1/1	c0001	963	294	77	57	114	10	34	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0002	963	29	1	3	25	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0003	963	11	3	8	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0004	963	11	2	5	0	0	4	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0005	963	4	4	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0006	963	3	0	0	3	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0007	963	2	2	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0008	963	1	0	0	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0009	963	1	1	0	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0010	963	1	0	0	0	0	1	copy fasta	AKR1E2	chr10	4821207	4853062
AKR1E2_chr10_4821207_4853062	0/0	c0011	963	1	0	1	0	0	0	copy fasta	AKR1E2	chr10	4821207	4853062
AKR7A2_chr1_19298965_19317144	1/1	c0001	1080	376	48	70	198	14	44	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0002	1080	14	5	0	7	0	2	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0003	1080	13	13	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0004	1080	11	1	7	0	2	1	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0005	1080	10	10	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0006	1080	6	0	0	6	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0007	1080	5	0	1	0	2	2	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0008	1080	4	4	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0009	1080	4	3	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0010	1080	2	2	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0011	1099	2	1	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0012	1080	1	0	0	0	0	1	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0013	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0014	1080	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0015	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0016	1080	1	0	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0017	1080	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0018	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0019	1080	1	0	0	1	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0020	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0021	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0022	1080	1	0	1	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0023	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A2_chr1_19298965_19317144	0/0	c0024	1080	1	1	0	0	0	0	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A3_chr1_19277573_19293770	0/0	c0001	996	174	10	34	112	6	12	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0002	996	79	11	18	30	9	11	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	1/1	c0003	996	54	23	6	18	0	5	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0004	996	25	1	12	4	1	7	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0005	996	21	2	1	15	0	3	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0006	996	19	11	1	4	0	3	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0007	996	10	8	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0008	996	10	0	0	8	0	2	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0009	996	7	7	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0010	996	5	5	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770