JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HNF1B_chr17_37681431_37750059	0/0	c0007	1674	1	0	0	1	0	0	copy fasta	HNF1B	chr17	37681431	37750059
HNF4A_chr20_44350699_44437845	1/1	c0001	1359	302	83	49	113	18	37	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0002	1359	7	0	3	2	0	2	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0003	1359	2	2	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0004	1359	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0005	1359	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0007	1359	1	0	0	0	0	1	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0008	1359	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0009	1359	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0010	1359	1	0	0	1	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0012	1359	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0013	1359	1	1	0	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4A_chr20_44350699_44437845	0/0	c0014	1359	1	0	1	0	0	0	copy fasta	HNF4A	chr20	44350699	44437845
HNF4G_chr8_75534869_75571834	0/0	c0001	1368	189	63	29	73	8	16	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	1/1	c0002	1368	152	6	29	85	9	21	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0003	1368	43	9	2	26	1	5	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0004	1368	4	4	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0005	1368	2	2	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0007	1368	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0008	1368	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNF4G_chr8_75534869_75571834	0/0	c0009	1368	1	1	0	0	0	0	copy fasta	HNF4G	chr8	75534869	75571834
HNMT_chr2_137959473_138021364	1/1	c0001	879	306	85	52	120	9	38	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	c0002	879	23	0	8	8	1	6	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	c0003	879	1	1	0	0	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	c0004	879	1	0	0	1	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNMT_chr2_137959473_138021364	0/0	c0005	879	1	0	0	1	0	0	copy fasta	HNMT	chr2	137959473	138021364
HNRNPA0_chr5_137740651_137759363	1/1	c0001	918	359	86	68	144	14	45	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	c0002	921	3	1	0	0	0	2	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	c0003	918	2	2	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	c0004	918	2	0	0	2	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	c0005	918	1	1	0	0	0	0	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA0_chr5_137740651_137759363	0/0	c0006	906	1	0	0	0	0	1	copy fasta	HNRNPA0	chr5	137740651	137759363
HNRNPA1L2_chr13_52637431_52648773	1/1	c0001	963	211	76	29	76	4	24	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0002	963	104	16	33	37	8	10	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0003	963	98	0	5	88	0	5	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0004	962	6	0	6	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0005	963	5	0	4	0	1	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0006	963	4	3	0	0	0	1	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0007	963	2	0	2	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0008	963	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0009	963	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0010	963	1	1	0	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0011	963	1	0	0	1	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0012	963	1	0	0	0	1	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L2_chr13_52637431_52648773	0/0	c0013	963	1	0	1	0	0	0	copy fasta	HNRNPA1L2	chr13	52637431	52648773
HNRNPA1L3_chr16_51640757_51652079	1/1	c0001	963	373	68	70	179	12	42	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0002	963	18	16	2	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079