JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HNRNPA1L3_chr16_51640757_51652079	0/0	c0003	963	7	6	1	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0004	963	5	0	0	5	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0005	963	5	0	0	5	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0006	963	4	0	0	4	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0007	963	2	0	0	0	0	2	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0008	963	2	0	0	2	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0009	963	2	2	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0010	963	1	0	1	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0011	963	1	1	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0012	963	1	0	0	1	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1L3_chr16_51640757_51652079	0/0	c0013	963	1	1	0	0	0	0	copy fasta	HNRNPA1L3	chr16	51640757	51652079
HNRNPA1_chr12_54275726_54292087	1/1	c0001	1119	374	93	72	154	14	39	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	c0002	1119	1	0	0	0	0	1	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA1_chr12_54275726_54292087	0/0	c0003	1119	1	1	0	0	0	0	copy fasta	HNRNPA1	chr12	54275726	54292087
HNRNPA2B1_chr7_26184927_26205746	1/1	c0001	1026	402	74	63	204	13	46	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	c0002	1026	25	21	4	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	c0003	1026	3	3	0	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	c0004	1026	1	0	1	0	0	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA2B1_chr7_26184927_26205746	0/0	c0005	1026	1	0	0	0	1	0	copy fasta	HNRNPA2B1	chr7	26184927	26205746
HNRNPA3_chr2_177207794_177228959	0/0	c0001	1137	330	98	60	134	6	32	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	c0002	1137	1	0	0	0	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPA3_chr2_177207794_177228959	0/0	c0003	1137	1	0	0	0	0	1	copy fasta	HNRNPA3	chr2	177207794	177228959
HNRNPAB_chr5_178199533_178216163	1/1	c0001	999	457	97	82	210	18	48	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	c0002	999	2	2	0	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	c0003	999	1	1	0	0	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	c0004	999	1	0	0	1	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPAB_chr5_178199533_178216163	0/0	c0005	999	1	0	0	1	0	0	copy fasta	HNRNPAB	chr5	178199533	178216163
HNRNPCL1_chr1_12842377_12853720	1/1	c0001	882	257	46	49	124	12	24	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0002	882	43	26	9	5	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0003	882	19	0	0	16	1	2	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0004	882	17	0	7	6	1	3	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0005	882	4	1	2	0	1	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0006	882	2	1	1	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0007	882	2	0	0	2	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0008	882	2	2	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0009	882	2	2	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0010	838	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0011	882	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0012	851	1	0	0	1	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0013	882	1	1	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0014	882	1	1	0	0	0	0	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL1_chr1_12842377_12853720	0/0	c0015	882	1	0	0	0	0	1	copy fasta	HNRNPCL1	chr1	12842377	12853720
HNRNPCL2_chr1_13110488_13121854	0/0	c0001	882	157	29	29	80	3	16	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/1	c0002	882	106	25	20	48	6	6	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0003	882	66	1	8	52	1	4	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0004	882	35	18	4	1	1	11	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0005	882	21	3	2	11	0	5	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0006	882	6	0	2	1	1	2	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0007	882	4	0	0	4	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854
HNRNPCL2_chr1_13110488_13121854	0/0	c0008	882	4	4	0	0	0	0	copy fasta	HNRNPCL2	chr1	13110488	13121854