JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HNRNPH1_chr5_179609178_179628671	0/0	c0004	1350	1	0	0	1	0	0	copy fasta	HNRNPH1	chr5	179609178	179628671
HNRNPH2_chrX_101403222_101419133	1/1	c0001	1350	302	73	49	140	10	28	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH2_chrX_101403222_101419133	0/0	c0002	1350	6	3	0	0	1	2	copy fasta	HNRNPH2	chrX	101403222	101419133
HNRNPH3_chr10_68327064_68348193	1/1	c0001	1041	390	85	62	183	13	45	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	c0002	1041	11	1	8	0	1	1	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPH3_chr10_68327064_68348193	0/0	c0003	1041	3	0	0	3	0	0	copy fasta	HNRNPH3	chr10	68327064	68348193
HNRNPK_chr9_83963083_83985215	1/1	c0001	1395	413	96	65	188	18	44	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPK_chr9_83963083_83985215	0/0	c0002	1395	1	0	1	0	0	0	copy fasta	HNRNPK	chr9	83963083	83985215
HNRNPLL_chr2_38556969_38607928	1/1	c0001	1629	315	87	59	121	12	34	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	c0002	1632	11	3	0	8	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	c0003	1629	9	0	0	9	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	c0004	1629	2	0	0	0	2	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPLL_chr2_38556969_38607928	0/0	c0005	1629	1	0	1	0	0	0	copy fasta	HNRNPLL	chr2	38556969	38607928
HNRNPL_chr19_38831370_38854986	1/1	c0001	1770	360	77	67	159	12	43	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0002	1770	18	15	1	2	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0003	1770	3	0	1	0	2	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0004	1770	2	2	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0005	1770	2	0	0	2	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0006	1770	1	0	1	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0007	1770	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0008	1770	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0009	1770	1	0	0	0	0	1	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0010	1770	1	1	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0011	1770	1	0	0	1	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPL_chr19_38831370_38854986	0/0	c0012	1770	1	1	0	0	0	0	copy fasta	HNRNPL	chr19	38831370	38854986
HNRNPM_chr19_8439975_8494114	0/1	c0001	2193	282	42	59	121	15	44	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	1/0	c0002	2193	38	33	2	1	0	1	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0003	2193	15	0	5	6	3	1	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0004	2193	5	5	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0005	2193	3	3	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0006	2193	3	0	0	3	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0007	2193	2	2	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0008	2193	2	1	0	1	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0009	2193	2	2	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0010	2193	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0011	2193	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0012	2193	1	0	0	0	0	1	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0013	2181	1	0	0	0	0	1	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0014	2193	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0015	2193	1	1	0	0	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0016	2183	1	0	0	1	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPM_chr19_8439975_8494114	0/0	c0017	2193	1	0	0	1	0	0	copy fasta	HNRNPM	chr19	8439975	8494114
HNRNPR_chr1_23299688_23349284	1/1	c0001	1902	352	87	56	156	11	40	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	c0002	1902	1	0	0	0	1	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPR_chr1_23299688_23349284	0/0	c0003	1902	1	1	0	0	0	0	copy fasta	HNRNPR	chr1	23299688	23349284
HNRNPUL1_chr19_41259372_41312787	0/1	c0001	2571	225	69	50	61	9	35	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0002	2571	54	10	9	30	3	2	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	1/0	c0003	2571	2	0	1	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0004	2571	2	0	0	2	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0005	2571	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787