JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HNRNPUL1_chr19_41259372_41312787	0/0	c0006	2571	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0007	2571	1	1	0	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0008	2571	1	0	0	0	0	1	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0009	2571	1	0	0	1	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0010	2571	1	1	0	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL1_chr19_41259372_41312787	0/0	c0011	2571	1	1	0	0	0	0	copy fasta	HNRNPUL1	chr19	41259372	41312787
HNRNPUL2_chr11_62707630_62732457	1/1	c0001	2244	319	82	61	134	8	32	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0002	2244	20	0	0	20	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0003	2244	3	3	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0004	2244	2	0	0	0	0	2	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0005	2244	2	0	0	0	2	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0006	2244	2	0	0	2	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0007	2244	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0008	2244	1	1	0	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0009	2244	1	0	0	1	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPUL2_chr11_62707630_62732457	0/0	c0010	2244	1	0	1	0	0	0	copy fasta	HNRNPUL2	chr11	62707630	62732457
HNRNPU_chr1_244845297_244869543	1/1	c0001	2478	260	62	39	120	7	30	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0002	2478	80	28	21	15	5	11	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0003	2478	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0004	2478	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0005	2478	1	0	0	0	0	1	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0006	2478	1	0	1	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0007	2478	1	0	0	1	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HNRNPU_chr1_244845297_244869543	0/0	c0008	2478	1	1	0	0	0	0	copy fasta	HNRNPU	chr1	244845297	244869543
HOATZ_chr11_111509778_111542043	1/1	c0001	510	297	84	66	99	10	36	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0002	510	4	4	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0003	510	3	3	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0004	510	3	0	0	3	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0005	510	2	2	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0006	510	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0007	510	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOATZ_chr11_111509778_111542043	0/0	c0008	510	1	1	0	0	0	0	copy fasta	HOATZ	chr11	111509778	111542043
HOGA1_chr10_97579389_97617802	1/1	c0001	984	249	59	52	93	11	32	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0002	984	130	25	18	69	5	13	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0003	984	17	4	2	11	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0004	984	10	0	8	2	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0005	984	6	6	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0006	984	2	0	0	2	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0007	984	2	2	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0008	984	2	0	2	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0009	984	1	0	0	1	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0010	984	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0011	984	1	1	0	0	0	0	copy fasta	HOGA1	chr10	97579389	97617802
HOGA1_chr10_97579389_97617802	0/0	c0012	984	1	0	0	0	0	1	copy fasta	HOGA1	chr10	97579389	97617802
HOMER1_chr5_79367636_79519134	1/1	c0001	1065	276	73	49	122	8	22	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	c0002	1065	12	7	3	0	0	2	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	c0003	1065	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER1_chr5_79367636_79519134	0/0	c0004	1065	1	1	0	0	0	0	copy fasta	HOMER1	chr5	79367636	79519134
HOMER2_chr15_82843983_82957720	1/1	c0001	1032	321	78	72	135	10	24	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0002	1032	16	15	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720