JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOMER2_chr15_82843983_82957720	0/0	c0003	1032	5	0	3	0	0	2	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0004	1032	1	0	0	0	1	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0005	1032	1	0	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0006	1032	1	0	0	0	1	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0008	1032	1	0	1	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER2_chr15_82843983_82957720	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	HOMER2	chr15	82843983	82957720
HOMER3_chr19_18924203_18946217	0/0	c0001	1086	251	70	26	117	8	30	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0002	1086	105	9	35	39	8	14	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/1	c0003	1086	25	0	12	8	1	3	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0004	1086	7	6	1	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0005	1086	7	7	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0006	1086	5	0	0	5	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0007	1086	4	4	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0008	1086	2	2	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0009	1086	1	0	0	1	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0010	1086	1	1	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	1/0	c0011	1086	1	0	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0012	1086	1	0	0	0	1	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0013	1086	1	0	0	0	0	1	copy fasta	HOMER3	chr19	18924203	18946217
HOMER3_chr19_18924203_18946217	0/0	c0014	1086	1	1	0	0	0	0	copy fasta	HOMER3	chr19	18924203	18946217
HOMEZ_chr14_23267422_23291132	0/1	c0001	1650	109	14	21	54	6	13	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	1/0	c0002	1653	94	11	13	60	5	4	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0003	1650	40	6	15	13	1	5	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0004	1650	37	21	1	7	0	8	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0005	1650	15	6	1	6	1	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0006	1653	13	0	3	10	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0007	1647	12	0	1	9	0	2	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0008	1650	12	11	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0009	1647	8	7	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0010	1650	8	2	4	0	0	2	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0011	1650	7	0	0	7	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0012	1647	6	0	0	6	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0013	1650	5	4	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0014	1650	4	3	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0015	1650	3	0	0	2	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0016	1653	2	0	2	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0017	1647	2	0	0	2	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0018	1670	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0019	1647	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0020	1650	1	0	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0021	1650	1	0	0	0	1	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0022	1650	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0023	1653	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0024	1650	1	0	0	0	0	1	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0025	1653	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0026	1650	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0027	1650	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0028	1653	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0029	1650	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132