JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOMEZ_chr14_23267422_23291132	0/0	c0030	1653	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0031	1650	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0032	1650	1	1	0	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0033	1618	1	0	1	0	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOMEZ_chr14_23267422_23291132	0/0	c0034	1650	1	0	0	1	0	0	copy fasta	HOMEZ	chr14	23267422	23291132
HOOK1_chr1_59809949_59881322	1/0	c0001	2187	219	68	31	88	10	21	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0002	2187	22	0	10	9	2	1	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0003	2187	4	4	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0004	2187	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0005	2187	1	0	0	1	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0006	2187	1	1	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/1	c0007	2187	1	0	0	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0008	2187	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0009	2187	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK1_chr1_59809949_59881322	0/0	c0010	2187	1	0	1	0	0	0	copy fasta	HOOK1	chr1	59809949	59881322
HOOK2_chr19_12758003_12780552	1/0	c0001	2160	236	77	46	80	5	27	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/1	c0002	2160	71	1	24	31	7	7	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0003	2160	16	9	0	5	1	1	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0004	2160	12	0	0	12	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0005	2160	5	5	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0006	2160	5	0	0	5	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0007	2160	2	0	0	2	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0008	2160	2	0	0	0	0	2	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0009	2160	2	2	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0010	2160	1	1	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0011	2160	1	0	0	0	1	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0012	2160	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0013	2160	1	0	0	0	0	1	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0014	2160	1	1	0	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0015	2160	1	0	1	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0016	2160	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0017	2160	1	0	0	1	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK2_chr19_12758003_12780552	0/0	c0018	2160	1	0	1	0	0	0	copy fasta	HOOK2	chr19	12758003	12780552
HOOK3_chr8_42891978_43035535	1/1	c0001	2157	156	76	32	28	2	16	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	c0002	2157	4	4	0	0	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	c0003	2157	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOOK3_chr8_42891978_43035535	0/0	c0004	2157	1	0	0	1	0	0	copy fasta	HOOK3	chr8	42891978	43035535
HOPX_chr4_56642998_56686296	1/1	c0001	276	360	79	68	162	16	33	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	c0002	276	15	3	2	5	0	5	copy fasta	HOPX	chr4	56642998	56686296
HOPX_chr4_56642998_56686296	0/0	c0003	276	1	0	0	1	0	0	copy fasta	HOPX	chr4	56642998	56686296
HORMAD1_chr1_150693060_150725895	1/0	c0001	1185	266	71	36	121	11	26	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/1	c0002	1185	117	20	19	59	5	13	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	c0003	1185	5	0	0	0	0	5	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	c0004	1185	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	c0005	1185	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	c0006	1185	1	1	0	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD1_chr1_150693060_150725895	0/0	c0007	1185	1	0	1	0	0	0	copy fasta	HORMAD1	chr1	150693060	150725895
HORMAD2_chr22_30075464_30182075	1/1	c0001	924	343	89	70	140	12	30	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	c0002	924	5	4	1	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HORMAD2_chr22_30075464_30182075	0/0	c0003	924	1	1	0	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075