JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HORMAD2_chr22_30075464_30182075	0/0	c0004	924	1	0	1	0	0	0	copy fasta	HORMAD2	chr22	30075464	30182075
HOXA10_chr7_27165605_27179320	1/1	c0001	1233	418	88	73	197	14	44	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0002	1233	6	6	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0003	1233	5	1	2	0	0	2	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0004	1233	3	0	0	3	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0005	1233	1	0	0	1	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0006	1233	1	0	0	1	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0007	1233	1	1	0	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA10_chr7_27165605_27179320	0/0	c0008	1233	1	0	1	0	0	0	copy fasta	HOXA10	chr7	27165605	27179320
HOXA11_chr7_27176157_27190232	1/1	c0001	942	427	97	78	190	16	44	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	c0002	942	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	c0003	942	1	0	0	1	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	c0004	942	1	0	0	0	0	1	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	c0005	942	1	0	0	0	0	1	copy fasta	HOXA11	chr7	27176157	27190232
HOXA11_chr7_27176157_27190232	0/0	c0006	942	1	1	0	0	0	0	copy fasta	HOXA11	chr7	27176157	27190232
HOXA13_chr7_27189364_27205091	1/0	c0001	1167	404	93	74	182	10	44	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0002	1167	2	0	2	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0003	1167	2	1	1	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0004	1167	2	2	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0005	1167	2	0	0	0	2	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/1	c0006	1149	1	0	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0007	1167	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0008	1167	1	1	0	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA13_chr7_27189364_27205091	0/0	c0009	1167	1	0	1	0	0	0	copy fasta	HOXA13	chr7	27189364	27205091
HOXA1_chr7_27087993_27101000	0/0	c0001	1008	308	27	63	165	13	40	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	1/0	c0002	1008	85	67	15	0	0	2	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0003	1011	4	1	0	1	0	2	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0004	1008	4	0	0	4	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0005	1011	3	3	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0006	1008	3	0	0	3	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0007	1011	2	2	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0008	1008	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0009	1008	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0010	1008	1	0	0	1	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/0	c0011	1008	1	0	0	0	1	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA1_chr7_27087993_27101000	0/1	c0012	1008	1	0	0	0	0	0	copy fasta	HOXA1	chr7	27087993	27101000
HOXA2_chr7_27095354_27107683	1/1	c0001	1131	401	96	75	166	16	46	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	c0002	1131	1	0	1	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	c0003	1131	1	1	0	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA2_chr7_27095354_27107683	0/0	c0004	1131	1	1	0	0	0	0	copy fasta	HOXA2	chr7	27095354	27107683
HOXA3_chr7_27102010_27157583	1/1	c0001	1332	317	78	64	127	6	40	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0002	1332	4	4	0	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0003	1332	1	0	1	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0004	1332	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0005	1332	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0006	1332	1	0	0	1	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA3_chr7_27102010_27157583	0/0	c0007	1332	1	0	1	0	0	0	copy fasta	HOXA3	chr7	27102010	27157583
HOXA4_chr7_27123525_27135757	0/1	c0001	963	296	60	51	133	10	41	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0002	963	79	21	19	34	2	3	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	1/0	c0003	963	15	9	1	1	0	3	copy fasta	HOXA4	chr7	27123525	27135757