JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXA4_chr7_27123525_27135757	0/0	c0004	963	6	0	0	6	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0005	963	5	5	0	0	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0006	963	2	0	0	2	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0007	963	1	0	1	0	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0008	963	1	1	0	0	0	0	copy fasta	HOXA4	chr7	27123525	27135757
HOXA4_chr7_27123525_27135757	0/0	c0009	963	1	0	0	0	0	1	copy fasta	HOXA4	chr7	27123525	27135757
HOXA5_chr7_27136052_27148681	1/1	c0001	813	394	85	74	179	12	42	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	c0002	813	2	0	0	2	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	c0003	781	1	0	0	1	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA5_chr7_27136052_27148681	0/0	c0004	813	1	1	0	0	0	0	copy fasta	HOXA5	chr7	27136052	27148681
HOXA6_chr7_27140396_27152774	1/0	c0001	702	358	64	70	176	12	35	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/1	c0002	702	26	20	2	0	0	3	copy fasta	HOXA6	chr7	27140396	27152774
HOXA6_chr7_27140396_27152774	0/0	c0003	702	2	0	2	0	0	0	copy fasta	HOXA6	chr7	27140396	27152774
HOXA7_chr7_27148716_27161675	0/0	c0001	693	232	8	40	141	8	35	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	1/0	c0002	693	108	37	29	34	2	5	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/1	c0003	693	49	41	3	1	0	3	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	c0004	693	5	3	1	0	0	1	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	c0005	693	1	1	0	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA7_chr7_27148716_27161675	0/0	c0006	693	1	0	1	0	0	0	copy fasta	HOXA7	chr7	27148716	27161675
HOXA9_chr7_27157438_27170537	1/1	c0001	819	381	92	77	159	9	42	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0002	819	34	0	1	31	1	1	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0003	819	6	5	1	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0004	819	2	0	0	2	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0005	819	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0006	819	1	0	0	0	1	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0007	819	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0008	819	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0009	819	1	0	0	0	0	1	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0010	819	1	0	0	0	1	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0011	819	1	0	1	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0012	819	1	0	0	1	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXA9_chr7_27157438_27170537	0/0	c0013	819	1	1	0	0	0	0	copy fasta	HOXA9	chr7	27157438	27170537
HOXB13_chr17_48719763_48733750	1/1	c0001	855	298	52	60	141	10	33	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0002	855	65	10	12	38	1	4	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0003	855	54	27	4	11	3	9	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0004	855	2	2	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0005	855	2	0	0	0	0	2	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0006	855	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0007	855	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0008	855	1	1	0	0	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0009	855	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB13_chr17_48719763_48733750	0/0	c0010	855	1	0	0	1	0	0	copy fasta	HOXB13	chr17	48719763	48733750
HOXB1_chr17_48523526_48536011	0/1	c0001	906	365	74	65	176	15	34	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0002	915	32	4	9	12	1	6	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0003	915	11	8	2	0	1	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	1/0	c0004	906	7	4	2	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0005	906	4	4	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0006	915	1	0	0	1	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0007	915	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0008	915	1	0	0	0	1	0	copy fasta	HOXB1	chr17	48523526	48536011