JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXB1_chr17_48523526_48536011	0/0	c0009	915	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0010	906	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0011	906	1	0	0	1	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB1_chr17_48523526_48536011	0/0	c0012	906	1	1	0	0	0	0	copy fasta	HOXB1	chr17	48523526	48536011
HOXB2_chr17_48537655_48550109	1/1	c0001	1071	409	84	74	187	12	50	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0002	1071	7	7	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0003	1071	2	1	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0004	1071	2	0	0	2	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0005	1071	2	2	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0006	1071	1	0	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0007	1071	1	1	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0008	1071	1	1	0	0	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB2_chr17_48537655_48550109	0/0	c0009	1071	1	0	0	1	0	0	copy fasta	HOXB2	chr17	48537655	48550109
HOXB3_chr17_48543870_48595241	0/1	c0001	1296	230	32	36	132	8	21	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	1/0	c0002	1296	127	47	27	35	4	13	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0003	1296	11	11	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0004	1296	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0006	1296	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0007	1296	1	0	0	1	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0008	1308	1	0	1	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB3_chr17_48543870_48595241	0/0	c0009	1296	1	1	0	0	0	0	copy fasta	HOXB3	chr17	48543870	48595241
HOXB4_chr17_48570507_48583350	1/1	c0001	756	398	92	67	181	16	40	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0002	756	3	3	0	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0003	756	2	0	0	2	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0004	756	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0005	756	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0006	756	1	0	0	1	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0007	756	1	1	0	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB4_chr17_48570507_48583350	0/0	c0008	756	1	0	1	0	0	0	copy fasta	HOXB4	chr17	48570507	48583350
HOXB5_chr17_48586257_48598779	0/1	c0001	810	379	73	70	190	11	34	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	1/0	c0002	810	22	17	4	0	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	c0003	810	11	8	2	0	1	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	c0004	799	1	0	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB5_chr17_48586257_48598779	0/0	c0005	810	1	0	0	1	0	0	copy fasta	HOXB5	chr17	48586257	48598779
HOXB6_chr17_48590751_48609986	1/1	c0001	675	376	95	61	174	11	33	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0002	675	8	0	4	0	3	1	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0003	675	2	0	2	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0004	675	2	2	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0005	675	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0006	675	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0007	675	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0008	675	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0009	675	1	0	1	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB6_chr17_48590751_48609986	0/0	c0010	675	1	1	0	0	0	0	copy fasta	HOXB6	chr17	48590751	48609986
HOXB7_chr17_48602232_48616017	0/1	c0001	654	280	75	49	111	11	33	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	1/0	c0002	654	70	13	18	29	1	8	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0003	654	58	5	3	46	2	2	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0004	654	1	0	0	0	0	1	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0005	654	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017