JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKR7A3_chr1_19277573_19293770	0/0	c0011	996	4	0	2	0	0	2	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0012	996	3	1	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0013	996	3	1	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0014	996	3	3	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0015	996	3	3	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0016	996	2	2	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0017	996	1	0	0	1	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0018	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0019	996	1	0	0	1	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0020	996	1	0	0	1	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0021	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0022	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0023	996	1	0	0	0	0	1	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0024	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0025	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	c0026	996	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKT1S1_chr19_49864039_49882355	1/1	c0001	771	406	83	71	189	14	47	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0002	771	3	3	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0003	771	2	0	0	2	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0004	771	2	1	1	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0005	771	2	2	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0006	771	1	1	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0007	771	1	1	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0008	771	1	0	0	1	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0009	771	1	1	0	0	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	c0010	771	1	0	0	0	0	1	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1_chr14_104764349_104800748	1/1	c0001	1443	218	67	48	68	14	19	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0002	1443	131	5	30	79	1	16	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0003	1443	13	12	1	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0004	1443	8	8	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0005	1443	5	0	1	0	1	3	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0006	1443	3	1	2	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0007	1443	2	2	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0008	1443	2	2	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0009	1443	2	0	0	2	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0010	1443	1	0	0	1	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT1_chr14_104764349_104800748	0/0	c0011	1443	1	1	0	0	0	0	copy fasta	AKT1	chr14	104764349	104800748
AKT2_chr19_40225317_40290345	1/1	c0001	1446	353	97	61	156	13	24	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	c0002	1446	3	0	1	1	1	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	c0003	1446	2	0	0	0	2	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	c0004	1446	1	1	0	0	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	c0005	1446	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT3_chr1_243494724_243855243	0/1	c0001	1440	300	76	62	111	10	40	copy fasta	AKT3	chr1	243494724	243855243
AKT3_chr1_243494724_243855243	0/0	c0002	1440	1	0	0	1	0	0	copy fasta	AKT3	chr1	243494724	243855243
AKTIP_chr16_53486040_53508209	1/1	c0001	879	368	75	69	158	14	50	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	c0002	879	17	17	0	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
AKTIP_chr16_53486040_53508209	0/0	c0003	879	1	0	1	0	0	0	copy fasta	AKTIP	chr16	53486040	53508209
ALAD_chr9_113381312_113406284	1/0	c0001	993	236	64	45	99	9	18	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0002	993	129	23	24	68	4	10	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/1	c0003	993	39	7	6	16	5	4	copy fasta	ALAD	chr9	113381312	113406284