JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXB7_chr17_48602232_48616017	0/0	c0006	654	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0007	654	1	0	1	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0008	654	1	0	1	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB7_chr17_48602232_48616017	0/0	c0009	654	1	1	0	0	0	0	copy fasta	HOXB7	chr17	48602232	48616017
HOXB8_chr17_48607346_48620292	1/1	c0001	732	382	71	63	188	13	45	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0002	732	23	16	5	0	1	1	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0003	732	12	11	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0004	732	2	0	0	2	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0005	732	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0006	732	1	0	1	0	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB8_chr17_48607346_48620292	0/0	c0007	732	1	0	0	1	0	0	copy fasta	HOXB8	chr17	48607346	48620292
HOXB9_chr17_48616156_48631358	1/1	c0001	753	407	95	69	187	16	38	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0002	753	6	0	2	4	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0003	753	2	0	0	2	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0004	753	2	0	0	0	0	2	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0005	753	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0006	753	1	0	1	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0007	753	1	1	0	0	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0008	753	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXB9_chr17_48616156_48631358	0/0	c0009	753	1	0	0	1	0	0	copy fasta	HOXB9	chr17	48616156	48631358
HOXC10_chr12_53980146_53995279	0/0	c0001	1029	330	90	64	129	13	34	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0002	1029	28	2	8	8	3	7	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0003	1029	6	0	0	6	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0004	1029	2	1	1	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0005	1029	2	0	2	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0007	1029	1	0	1	0	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0008	1029	1	0	0	0	0	1	copy fasta	HOXC10	chr12	53980146	53995279
HOXC10_chr12_53980146_53995279	0/0	c0009	1029	1	0	0	1	0	0	copy fasta	HOXC10	chr12	53980146	53995279
HOXC11_chr12_53968126_53982643	0/1	c0001	915	353	89	68	143	17	35	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0002	915	33	1	8	17	1	6	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0003	915	4	0	0	4	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0004	915	2	0	0	2	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0005	915	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0006	915	1	1	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	0/0	c0007	915	1	0	0	0	0	1	copy fasta	HOXC11	chr12	53968126	53982643
HOXC11_chr12_53968126_53982643	1/0	c0008	915	1	0	0	0	0	0	copy fasta	HOXC11	chr12	53968126	53982643
HOXC12_chr12_53949903_53963956	1/1	c0001	849	412	88	85	180	16	41	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0002	849	5	5	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0003	849	1	0	0	0	0	1	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0004	849	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0005	849	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0006	849	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0007	849	1	0	0	1	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0008	849	1	1	0	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC12_chr12_53949903_53963956	0/0	c0009	849	1	0	1	0	0	0	copy fasta	HOXC12	chr12	53949903	53963956
HOXC13_chr12_53933831_53951544	1/1	c0001	993	396	98	75	168	12	41	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	c0002	996	4	0	1	0	0	3	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	c0003	993	1	0	1	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544
HOXC13_chr12_53933831_53951544	0/0	c0004	993	1	0	1	0	0	0	copy fasta	HOXC13	chr12	53933831	53951544