JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXC4_chr12_54048835_54061030	1/1	c0001	795	365	89	56	183	10	25	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	c0002	795	31	0	4	12	3	12	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	c0003	795	1	0	0	1	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	c0004	795	1	0	0	0	1	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	c0005	795	1	1	0	0	0	0	copy fasta	HOXC4	chr12	54048835	54061030
HOXC4_chr12_54048835_54061030	0/0	c0006	795	1	0	0	0	0	1	copy fasta	HOXC4	chr12	54048835	54061030
HOXC5_chr12_54028050_54040361	1/1	c0001	669	409	85	78	186	16	42	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	c0002	669	3	3	0	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC5_chr12_54028050_54040361	0/0	c0003	669	2	2	0	0	0	0	copy fasta	HOXC5	chr12	54028050	54040361
HOXC6_chr12_54023440_54035823	1/1	c0001	708	402	87	82	173	16	42	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	c0002	708	1	0	0	1	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC6_chr12_54023440_54035823	0/0	c0003	708	1	1	0	0	0	0	copy fasta	HOXC6	chr12	54023440	54035823
HOXC8_chr12_54003985_54017769	1/1	c0001	729	298	75	55	125	14	27	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0002	729	3	1	2	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0003	714	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0004	729	1	1	0	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0005	729	1	0	0	0	0	1	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0006	729	1	0	0	1	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC8_chr12_54003985_54017769	0/0	c0007	729	1	0	1	0	0	0	copy fasta	HOXC8	chr12	54003985	54017769
HOXC9_chr12_53995161_54008337	0/1	c0001	783	200	40	38	89	11	21	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	1/0	c0002	783	125	42	27	40	5	10	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	c0003	783	9	0	1	6	2	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	c0004	783	6	6	0	0	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	c0005	783	1	0	0	0	0	1	copy fasta	HOXC9	chr12	53995161	54008337
HOXC9_chr12_53995161_54008337	0/0	c0006	783	1	0	0	1	0	0	copy fasta	HOXC9	chr12	53995161	54008337
HOXD10_chr2_176111778_176124937	1/1	c0001	1023	414	83	74	191	14	50	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0002	1023	4	0	4	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0003	1023	2	2	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0004	1023	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0005	1023	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0007	1023	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0010	1023	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD10_chr2_176111778_176124937	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	HOXD10	chr2	176111778	176124937
HOXD11_chr2_176102280_176114754	1/1	c0001	1017	426	88	79	195	14	48	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	c0002	1017	2	0	0	2	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	c0003	1017	1	0	1	0	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD11_chr2_176102280_176114754	0/0	c0004	1017	1	0	0	1	0	0	copy fasta	HOXD11	chr2	176102280	176114754
HOXD12_chr2_176094795_176107489	1/1	c0001	813	299	40	50	163	11	33	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0002	813	75	42	11	8	3	11	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0003	813	15	0	12	2	0	1	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0004	813	2	2	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0005	813	2	0	2	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0006	813	2	0	0	0	0	2	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0007	813	1	0	1	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0008	813	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0009	813	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0010	813	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489