JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HOXD12_chr2_176094795_176107489	0/0	c0011	813	1	1	0	0	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0012	813	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0013	813	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0014	813	1	0	0	0	0	1	copy fasta	HOXD12	chr2	176094795	176107489
HOXD12_chr2_176094795_176107489	0/0	c0015	813	1	0	0	1	0	0	copy fasta	HOXD12	chr2	176094795	176107489
HOXD13_chr2_176087721_176100944	1/0	c0001	1032	208	12	52	108	8	27	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/1	c0002	1032	180	63	20	73	7	16	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0003	1032	9	8	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0004	1032	4	0	0	4	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0005	1032	3	3	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0006	1020	2	0	0	2	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0007	1032	2	0	2	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0012	1044	1	0	0	0	0	1	copy fasta	HOXD13	chr2	176087721	176100944
HOXD13_chr2_176087721_176100944	0/0	c0013	1032	1	0	0	0	1	0	copy fasta	HOXD13	chr2	176087721	176100944
HOXD1_chr2_176183668_176195907	1/1	c0001	987	266	53	50	117	12	32	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	c0002	987	35	5	17	4	4	5	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	c0003	987	28	3	0	24	0	1	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	c0004	987	27	26	1	0	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	c0005	987	1	0	0	1	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD1_chr2_176183668_176195907	0/0	c0006	987	1	1	0	0	0	0	copy fasta	HOXD1	chr2	176183668	176195907
HOXD3_chr2_176152307_176178098	0/1	c0001	1299	174	35	16	99	6	17	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	1/0	c0002	1299	76	6	18	41	5	5	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0003	1299	57	16	19	5	5	12	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0004	1299	21	20	1	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0005	1299	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD3_chr2_176152307_176178098	0/0	c0008	1299	1	1	0	0	0	0	copy fasta	HOXD3	chr2	176152307	176178098
HOXD4_chr2_176146550_176158226	1/1	c0001	768	276	46	40	148	13	27	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0002	768	65	26	21	5	1	12	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0003	768	5	5	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0004	768	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0005	768	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0006	768	1	1	0	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0007	768	1	0	1	0	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0008	768	1	0	0	1	0	0	copy fasta	HOXD4	chr2	176146550	176158226
HOXD4_chr2_176146550_176158226	0/0	c0009	768	1	0	0	0	0	1	copy fasta	HOXD4	chr2	176146550	176158226
HOXD8_chr2_176124705_176137695	1/1	c0001	873	297	36	67	142	14	36	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0002	873	48	30	2	11	0	5	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0003	873	21	3	0	18	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0004	879	9	3	2	0	0	4	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0005	873	6	6	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0006	855	4	4	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0007	873	3	0	0	3	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0008	873	3	3	0	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695
HOXD8_chr2_176124705_176137695	0/0	c0009	873	2	0	2	0	0	0	copy fasta	HOXD8	chr2	176124705	176137695