JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HPD_chr12_121834527_121863859	0/0	c0006	1182	3	1	0	1	0	1	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0007	1182	2	0	0	0	0	2	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0008	1182	2	0	0	0	0	2	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0009	1182	2	2	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0010	1182	1	0	0	1	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0011	1182	1	0	0	0	0	1	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0012	1182	1	1	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0013	1182	1	1	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPD_chr12_121834527_121863859	0/0	c0014	1182	1	1	0	0	0	0	copy fasta	HPD	chr12	121834527	121863859
HPF1_chr4_169724470_169762944	0/0	c0001	1041	187	38	38	81	6	24	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	1/0	c0002	1041	55	9	8	25	3	9	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0003	1041	34	20	3	4	1	6	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0004	1041	33	21	2	8	0	2	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0005	1041	5	5	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0006	1041	2	2	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/1	c0007	1041	1	0	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0008	1041	1	0	1	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0009	851	1	0	0	0	0	1	copy fasta	HPF1	chr4	169724470	169762944
HPF1_chr4_169724470_169762944	0/0	c0010	1041	1	1	0	0	0	0	copy fasta	HPF1	chr4	169724470	169762944
HPGDS_chr4_94293535_94347836	1/1	c0001	600	302	83	50	121	14	32	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0002	600	3	3	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0003	600	3	0	2	1	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0004	600	1	0	0	1	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0005	600	1	0	0	1	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0006	600	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGDS_chr4_94293535_94347836	0/0	c0007	600	1	1	0	0	0	0	copy fasta	HPGDS	chr4	94293535	94347836
HPGD_chr4_174485175_174527488	1/1	c0001	801	258	53	46	109	11	37	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0002	801	139	25	21	77	5	11	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0003	801	8	8	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0004	801	2	0	2	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0005	801	2	2	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0006	801	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0007	801	1	0	0	1	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0008	801	1	1	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0009	801	1	1	0	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPGD_chr4_174485175_174527488	0/0	c0010	801	1	0	1	0	0	0	copy fasta	HPGD	chr4	174485175	174527488
HPN_chr19_35036721_35071573	1/0	c0001	1254	354	88	63	148	13	41	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/1	c0002	1254	19	1	7	4	3	3	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0003	1254	4	4	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0004	1254	2	0	0	2	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0005	1254	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPN_chr19_35036721_35071573	0/0	c0009	1254	1	0	0	1	0	0	copy fasta	HPN	chr19	35036721	35071573
HPRT1_chrX_134455165_134505668	1/1	c0001	657	275	58	51	134	7	23	copy fasta	HPRT1	chrX	134455165	134505668
HPRT1_chrX_134455165_134505668	0/0	c0002	656	1	0	0	1	0	0	copy fasta	HPRT1	chrX	134455165	134505668
HPR_chr16_72058226_72082246	1/0	c0001	1047	216	26	56	100	9	24	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/1	c0002	1047	144	39	15	67	4	18	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0003	1047	29	14	2	10	2	1	copy fasta	HPR	chr16	72058226	72082246