JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HPR_chr16_72058226_72082246	0/0	c0004	1047	4	1	1	0	1	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0005	1047	2	0	0	2	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0006	1047	2	0	0	0	1	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0007	1047	1	0	0	0	1	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0011	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0012	1047	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0013	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0014	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0015	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0016	1047	1	0	0	0	0	1	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0017	1047	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0018	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0019	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0020	1047	1	1	0	0	0	0	copy fasta	HPR	chr16	72058226	72082246
HPR_chr16_72058226_72082246	0/0	c0021	1047	1	0	0	1	0	0	copy fasta	HPR	chr16	72058226	72082246
HPS1_chr10_98411198_98451935	1/1	c0001	2103	189	46	35	83	7	16	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0002	2103	110	12	12	64	4	18	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0003	2103	32	0	11	19	0	2	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0004	2103	16	2	2	4	3	5	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0005	2103	14	1	2	6	1	4	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0006	2103	14	8	3	3	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0007	2103	10	0	3	7	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0008	2103	6	0	0	5	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0009	2103	4	2	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0010	2103	3	2	0	0	0	1	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0011	2103	3	0	3	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0012	2103	3	0	1	1	1	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0013	2103	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0014	2103	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0015	2103	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0016	2103	2	2	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0017	2103	2	0	0	2	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0018	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0019	2103	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0020	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0021	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0022	2103	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0023	2103	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0024	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0025	2103	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0026	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0027	2103	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0028	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0029	2103	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0030	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0031	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0032	2103	1	0	0	0	0	1	copy fasta	HPS1	chr10	98411198	98451935