JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HPS1_chr10_98411198_98451935	0/0	c0033	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0034	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0035	2103	1	0	1	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0036	2103	1	1	0	0	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS1_chr10_98411198_98451935	0/0	c0037	2103	1	0	0	1	0	0	copy fasta	HPS1	chr10	98411198	98451935
HPS3_chr3_149124638_149178732	1/0	c0001	3015	112	7	19	64	6	15	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0002	3015	85	36	12	22	3	12	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0003	3015	72	22	11	26	7	6	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/1	c0004	3015	61	1	7	43	2	7	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0005	3015	25	19	5	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0006	3015	5	0	1	0	0	4	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0007	3015	4	4	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0008	3015	3	3	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0009	3015	3	0	0	3	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0010	3015	3	0	0	3	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0011	3015	2	0	0	0	0	2	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0012	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0013	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0014	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0015	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0016	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0017	3015	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0018	3015	1	0	0	0	0	1	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0019	3015	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0020	3015	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0021	3015	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0022	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0023	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0024	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0025	3015	1	0	0	1	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0026	3015	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0027	3015	1	1	0	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS3_chr3_149124638_149178732	0/0	c0028	2798	1	0	1	0	0	0	copy fasta	HPS3	chr3	149124638	149178732
HPS4_chr22_26445882_26488783	0/1	c0001	2127	156	26	34	71	5	19	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0002	2127	114	18	16	58	8	14	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	1/0	c0003	2127	61	18	17	21	1	3	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0004	2127	21	0	0	20	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0005	2127	10	9	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0006	2127	6	6	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0007	2127	5	0	0	5	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0008	2127	4	1	3	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0009	2127	4	4	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0010	2127	4	4	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0011	2127	3	1	2	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0012	2127	2	0	0	2	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0013	2127	2	0	0	0	2	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0014	2127	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0015	2127	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0016	2127	1	0	0	0	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0017	2127	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783