JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HPS4_chr22_26445882_26488783	0/0	c0018	2127	1	0	0	0	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0019	2127	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0020	2127	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0021	2127	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0022	2127	1	0	0	1	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0023	2127	1	0	0	0	0	1	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0024	2127	1	0	1	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS4_chr22_26445882_26488783	0/0	c0025	2127	1	1	0	0	0	0	copy fasta	HPS4	chr22	26445882	26488783
HPS5_chr11_18273676_18327140	0/0	c0001	3390	232	53	35	120	9	15	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0002	3390	55	14	9	28	3	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	1/1	c0003	3390	51	17	15	8	1	8	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0004	3390	9	9	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0005	3390	3	0	0	3	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0006	3390	2	0	0	2	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0007	3390	2	0	0	0	0	2	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0008	3390	2	0	2	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0009	3390	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0010	3390	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0011	3390	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0012	3390	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0013	3390	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0014	3390	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0015	3390	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0016	3390	1	0	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0017	3390	1	0	0	0	1	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0018	3390	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0019	3390	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0020	3390	1	1	0	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0021	3390	1	0	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0022	3390	1	0	0	0	0	1	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0023	3390	1	0	0	1	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS5_chr11_18273676_18327140	0/0	c0024	3390	1	0	1	0	0	0	copy fasta	HPS5	chr11	18273676	18327140
HPS6_chr10_102060349_102073036	1/1	c0001	2328	348	64	74	158	13	37	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0002	2328	19	0	6	13	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0003	2328	7	6	1	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0004	2328	3	3	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0005	2328	3	3	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0006	2328	2	0	1	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0007	2328	2	0	0	2	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0008	2328	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0009	2328	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0010	2328	1	0	0	0	1	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0011	2328	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0012	2328	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0013	2328	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0014	2328	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0015	2328	1	0	0	0	0	1	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0016	2328	1	0	0	1	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0017	2328	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPS6_chr10_102060349_102073036	0/0	c0018	2328	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036