JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HPS6_chr10_102060349_102073036	0/0	c0019	2328	1	1	0	0	0	0	copy fasta	HPS6	chr10	102060349	102073036
HPSE2_chr10_98452077_99240852	0/0	c0001	1779	85	33	13	31	3	5	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	c0002	1779	50	20	7	19	1	3	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	c0003	1779	3	3	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	c0004	1779	2	2	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	c0005	1779	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE2_chr10_98452077_99240852	0/0	c0006	1779	1	1	0	0	0	0	copy fasta	HPSE2	chr10	98452077	99240852
HPSE_chr4_83287461_83339848	0/0	c0001	1632	209	64	33	74	6	32	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	1/1	c0002	1632	69	8	24	24	5	6	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0003	1632	20	19	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0004	1632	6	0	6	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0005	1632	5	4	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0006	1632	4	0	0	4	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0007	1632	2	2	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0008	1632	2	0	0	2	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0009	1632	1	1	0	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0010	1632	1	0	1	0	0	0	copy fasta	HPSE	chr4	83287461	83339848
HPSE_chr4_83287461_83339848	0/0	c0011	1632	1	0	0	0	1	0	copy fasta	HPSE	chr4	83287461	83339848
HPX_chr11_6426049_6445987	1/1	c0001	1389	394	66	79	181	18	48	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0002	1389	7	7	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0003	1389	5	2	3	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0004	1389	5	5	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0005	1389	4	4	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0006	1389	4	4	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0007	1389	3	0	0	3	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0008	1389	2	1	1	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0009	1389	2	2	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0010	1389	1	0	1	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0011	1389	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0012	1389	1	0	0	1	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0013	1389	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0014	1389	1	0	0	1	0	0	copy fasta	HPX	chr11	6426049	6445987
HPX_chr11_6426049_6445987	0/0	c0015	1389	1	1	0	0	0	0	copy fasta	HPX	chr11	6426049	6445987
HP_chr16_72049505_72066055	1/0	c0001	1221	237	27	30	129	12	38	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0002	1044	101	18	32	43	3	5	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0003	1044	58	44	9	0	1	4	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0004	1221	7	0	0	7	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0005	1221	5	0	4	0	1	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0006	1044	3	0	0	3	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0007	1221	2	0	1	0	1	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0008	1221	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0009	1221	1	0	1	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0010	1221	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0011	1221	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0012	1221	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0013	1221	1	0	0	0	0	1	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0014	17412	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0015	1221	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0016	1221	1	1	0	0	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0017	1221	1	0	1	0	0	0	copy fasta	HP	chr16	72049505	72066055