JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HP_chr16_72049505_72066055	0/0	c0018	1044	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HP_chr16_72049505_72066055	0/0	c0019	1221	1	0	0	1	0	0	copy fasta	HP	chr16	72049505	72066055
HRAS_chr11_527242_540576	0/0	c0001	570	281	56	45	137	9	34	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/1	c0002	570	115	37	29	33	7	8	copy fasta	HRAS	chr11	527242	540576
HRAS_chr11_527242_540576	0/0	c0003	585	1	1	0	0	0	0	copy fasta	HRAS	chr11	527242	540576
HRCT1_chr9_35901202_35912136	1/1	c0001	348	138	12	31	72	6	15	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0002	345	22	3	3	8	2	6	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0003	348	20	2	3	15	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0004	360	19	3	0	13	1	2	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0005	345	18	2	0	16	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0006	366	18	8	2	6	1	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0007	387	11	0	1	10	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0008	354	10	2	0	8	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0009	390	8	0	0	8	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0010	387	8	1	0	7	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0011	354	8	1	2	4	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0012	399	8	0	0	8	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0013	345	8	0	4	2	0	2	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0014	345	7	0	0	6	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0015	348	7	7	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0016	360	4	4	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0017	348	4	3	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0018	360	4	1	1	2	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0019	387	4	0	0	4	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0020	366	4	1	2	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0021	402	4	0	1	0	2	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0022	387	3	0	0	3	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0023	348	3	0	1	1	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0024	348	3	2	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0025	360	2	2	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0026	531	2	1	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0027	387	2	1	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0028	348	2	0	0	2	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0029	363	2	2	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0030	408	2	2	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0031	450	2	0	2	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0032	387	2	0	0	2	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0033	390	2	0	0	2	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0034	363	2	2	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0035	363	2	2	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0036	399	2	0	2	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0037	363	2	1	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0038	441	2	0	1	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0039	366	2	1	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0040	348	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0041	363	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0042	351	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0043	390	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0044	399	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0045	360	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136