JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALAD_chr9_113381312_113406284	0/0	c0004	993	25	0	2	15	0	8	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0005	993	6	0	6	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0006	993	3	2	1	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0007	993	2	2	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0008	993	2	0	0	0	0	2	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0009	993	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0010	993	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0011	993	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	c0012	993	1	1	0	0	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAS1_chr3_52193160_52219327	1/0	c0001	1923	185	62	33	63	8	18	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/1	c0002	1923	147	23	33	69	8	13	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0003	1923	5	0	5	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0004	1923	3	0	0	2	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0005	1923	2	0	0	2	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0006	1923	2	0	0	2	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0007	1923	1	0	0	0	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0008	1923	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0009	1923	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0010	1923	1	0	0	0	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0011	1923	1	0	1	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0012	1923	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0013	1923	1	0	0	1	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0014	1923	1	0	0	1	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0015	1923	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	c0016	1923	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS2_chrX_55004055_55035977	1/1	c0001	1764	272	66	53	120	5	26	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0002	1764	4	4	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0003	1764	2	2	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0004	1764	2	2	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0005	1764	1	1	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0006	1764	1	0	1	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0007	1764	1	0	0	1	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	c0008	1764	1	1	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALB_chr4_73399287_73426482	1/1	c0001	1830	205	44	48	80	9	22	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0002	1830	178	45	22	92	5	14	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0003	1830	3	0	1	0	0	2	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0004	1830	2	0	0	0	2	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0005	1830	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0006	1830	1	1	0	0	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0007	1830	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	c0008	1830	1	0	1	0	0	0	copy fasta	ALB	chr4	73399287	73426482
ALCAM_chr3_105361909_105581900	0/0	c0001	1752	167	36	15	95	5	16	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0002	1752	82	29	17	21	6	9	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0003	1752	53	5	15	28	1	4	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0004	1752	24	2	5	11	3	3	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/1	c0005	1752	18	0	6	6	1	4	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	1/0	c0006	1752	13	10	2	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0007	1752	7	0	4	0	2	1	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0008	1752	3	2	1	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	c0009	1752	2	0	0	2	0	0	copy fasta	ALCAM	chr3	105361909	105581900