JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRCT1_chr9_35901202_35912136	0/0	c0046	363	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0047	390	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0048	351	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0049	402	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0050	399	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0051	489	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0052	360	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0053	309	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0054	387	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0055	408	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0056	366	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0057	372	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0058	540	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0059	417	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0060	405	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0061	444	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0062	576	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0063	432	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0064	396	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0065	399	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0066	498	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0067	387	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0068	363	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0069	450	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0070	348	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0071	348	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0072	396	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0073	402	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0074	511	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0075	387	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0076	369	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0077	348	1	0	0	1	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0078	363	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0079	360	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0080	351	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0081	453	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0082	396	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0083	351	1	0	0	0	0	1	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0084	405	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0085	438	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0086	372	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0087	402	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0088	351	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0089	372	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0090	387	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0091	426	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0092	402	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0093	504	1	0	0	0	1	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0094	465	1	0	1	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRCT1_chr9_35901202_35912136	0/0	c0095	438	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136