JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRCT1_chr9_35901202_35912136	0/0	c0096	348	1	1	0	0	0	0	copy fasta	HRCT1	chr9	35901202	35912136
HRC_chr19_49146198_49160396	1/0	c0001	2100	158	9	24	99	9	16	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/1	c0002	2100	85	3	36	29	5	11	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0003	2100	26	12	1	9	0	4	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0004	2097	13	11	2	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0005	2103	12	3	4	4	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0006	2103	10	5	1	2	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0007	2100	10	6	4	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0008	2097	8	7	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0009	2247	8	8	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0010	2100	6	0	0	6	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0011	2103	4	0	1	3	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0012	2247	4	4	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0013	2100	3	0	0	3	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0014	2100	3	0	0	1	1	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0015	2100	2	0	0	0	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0016	2100	2	1	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0017	2100	2	1	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0018	2097	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0019	2103	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0020	2100	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0021	2097	2	0	0	2	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0022	2094	2	0	0	0	0	2	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0023	2097	2	0	1	0	1	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0024	2100	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0025	2259	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0026	2100	2	1	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0027	2247	2	2	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0028	2103	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0029	2262	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0030	2097	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0031	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0032	2094	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0033	2100	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0034	2097	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0035	2250	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0036	2100	1	0	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0037	2100	1	0	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0038	2097	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0039	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0040	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0041	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0042	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0043	2100	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0044	2244	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0045	2100	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0046	2100	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0047	2100	1	0	0	0	0	1	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0048	2097	1	0	1	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0049	2103	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396