JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRC_chr19_49146198_49160396	0/0	c0050	2100	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0051	2103	1	0	0	1	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0052	2253	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0053	2247	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0054	2097	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0055	2247	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0056	2250	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRC_chr19_49146198_49160396	0/0	c0057	2247	1	1	0	0	0	0	copy fasta	HRC	chr19	49146198	49160396
HRG_chr3_186661014_186683234	1/0	c0001	1578	112	22	34	33	6	16	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0002	1578	98	5	15	64	5	9	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0003	1578	81	4	13	54	2	8	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0004	1578	61	24	10	23	1	3	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/1	c0005	1578	53	17	8	19	0	8	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0006	1578	15	0	0	15	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0007	1578	9	2	0	7	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0008	1578	9	1	1	6	0	1	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0009	1575	7	6	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0010	1578	4	4	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0011	1578	4	4	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0012	1578	3	3	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0013	1578	3	3	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0014	1578	2	0	0	0	0	2	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0015	1578	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0016	1578	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0017	1578	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0018	1578	1	0	0	0	0	1	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0019	1578	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0020	1578	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0021	1578	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0022	1578	1	0	0	1	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0023	1578	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0024	1578	1	0	1	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRG_chr3_186661014_186683234	0/0	c0025	1578	1	1	0	0	0	0	copy fasta	HRG	chr3	186661014	186683234
HRH1_chr3_11149493_11268557	1/1	c0001	1464	320	75	49	144	11	39	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0002	1464	7	2	4	0	0	1	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0003	1464	6	6	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0004	1464	6	6	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0005	1464	4	4	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0006	1464	3	0	0	3	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0007	1464	1	1	0	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0008	1464	1	0	1	0	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0010	1464	1	0	0	1	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	HRH1	chr3	11149493	11268557
HRH1_chr3_11149493_11268557	0/0	c0012	1464	1	0	0	0	1	0	copy fasta	HRH1	chr3	11149493	11268557
HRH2_chr5_175653071_175715756	1/1	c0001	1269	236	83	37	89	7	18	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	c0002	1269	11	0	3	4	1	3	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	c0003	1269	10	10	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	c0004	1269	4	0	0	3	0	1	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	c0005	1269	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756