JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRH2_chr5_175653071_175715756	0/0	c0006	1269	1	1	0	0	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH2_chr5_175653071_175715756	0/0	c0007	1269	1	0	0	1	0	0	copy fasta	HRH2	chr5	175653071	175715756
HRH3_chr20_62209960_62225278	1/1	c0001	1338	175	29	39	81	7	17	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0002	1338	117	42	27	32	5	11	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0003	1338	61	12	6	30	3	10	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0004	1338	4	4	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0005	1338	3	1	0	0	0	2	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0006	1338	2	0	0	0	0	2	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0007	1338	1	0	0	1	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0008	1338	1	0	0	0	1	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0009	1338	1	1	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0010	1338	1	0	1	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH3_chr20_62209960_62225278	0/0	c0012	1338	1	0	1	0	0	0	copy fasta	HRH3	chr20	62209960	62225278
HRH4_chr18_24455637_24484961	1/1	c0001	1173	355	75	54	167	13	44	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0002	1173	46	2	21	20	1	2	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0003	1173	12	12	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0004	1173	4	0	0	4	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0005	1173	2	1	1	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0006	1173	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRH4_chr18_24455637_24484961	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	HRH4	chr18	24455637	24484961
HRK_chr12_116851144_116886441	1/1	c0001	276	358	84	52	166	12	42	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	c0002	276	6	6	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	c0003	276	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRK_chr12_116851144_116886441	0/0	c0004	276	1	1	0	0	0	0	copy fasta	HRK	chr12	116851144	116886441
HRNR_chr1_152207076_152229193	0/0	c0001	7142	40	0	12	23	2	3	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0002	9962	39	1	10	25	1	2	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0003	7142	17	0	1	16	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0004	9260	14	2	5	7	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0005	9260	9	0	5	0	3	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0006	9963	7	0	7	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0007	15608	7	1	1	1	1	3	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0008	5733	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0009	10313	5	5	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0010	9261	4	4	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0011	21254	4	0	0	4	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0012	21254	4	0	0	4	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0013	5729	4	0	0	4	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0014	9962	4	4	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	1/0	c0015	8553	3	2	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0016	21254	3	0	0	3	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0017	21254	3	1	1	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0018	8552	3	0	1	0	2	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0019	8552	3	3	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0020	7142	3	3	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0021	8552	3	3	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0022	5733	2	1	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193