JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRNR_chr1_152207076_152229193	0/0	c0073	27602	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0074	17018	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0075	21254	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0076	22664	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0077	17018	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0078	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0079	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0080	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0081	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0082	19136	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0083	26900	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0084	15608	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0085	15608	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0086	28310	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0087	24074	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0088	20552	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0089	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0090	22664	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0091	22664	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0092	30422	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0093	15608	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0094	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0095	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0096	19136	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/1	c0097	20546	1	0	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0098	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0099	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0100	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0101	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0102	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0103	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0104	21255	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0105	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0106	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0107	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0108	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0109	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0110	19844	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0111	26900	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0112	21257	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0113	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0114	25484	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0115	19136	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0116	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0117	26900	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0118	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0119	19841	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0120	15608	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0121	7142	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0122	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193