JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRNR_chr1_152207076_152229193	0/0	c0123	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0124	21254	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0125	22664	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0126	29012	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0127	22664	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0128	24074	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0129	22664	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0130	22664	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0131	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0132	15608	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0133	22658	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0134	18428	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0135	26894	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0136	26894	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0137	26542	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0138	21956	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0139	21956	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0140	21953	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0141	21956	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0142	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0143	23363	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0144	23723	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0145	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0146	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0147	21956	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0148	21956	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0149	21956	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0150	23723	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0151	21956	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0152	21248	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0153	21956	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0154	21956	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0155	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0156	33944	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0157	21956	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0158	17018	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0159	20546	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0160	24074	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0161	21956	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0162	21956	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0163	21956	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0164	8552	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0165	27524	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0166	9260	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0167	9260	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0168	7850	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0169	9260	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0170	9260	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0171	9260	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0172	8552	1	0	0	0	1	0	copy fasta	HRNR	chr1	152207076	152229193