JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HRNR_chr1_152207076_152229193	0/0	c0223	9962	1	0	0	0	0	1	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0224	9962	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0225	9962	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0226	9962	1	0	1	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0227	9962	1	0	0	1	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0228	8552	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0229	8552	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0230	9962	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HRNR_chr1_152207076_152229193	0/0	c0231	8552	1	1	0	0	0	0	copy fasta	HRNR	chr1	152207076	152229193
HROB_chr17_44136930_44167476	0/0	c0001	1941	181	58	29	81	4	9	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	1/1	c0002	1941	117	11	28	53	6	17	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0003	1941	7	0	0	7	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0004	1941	6	6	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0005	1941	5	5	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0006	1941	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0007	1941	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0008	1941	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0009	1941	1	1	0	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0010	1941	1	0	0	1	0	0	copy fasta	HROB	chr17	44136930	44167476
HROB_chr17_44136930_44167476	0/0	c0011	1941	1	0	1	0	0	0	copy fasta	HROB	chr17	44136930	44167476
HRURF_chr8_22125458_22136010	1/1	c0001	105	407	100	82	159	16	48	copy fasta	HRURF	chr8	22125458	22136010
HRURF_chr8_22125458_22136010	0/0	c0002	105	1	0	0	1	0	0	copy fasta	HRURF	chr8	22125458	22136010
HR_chr8_22109419_22136010	1/0	c0001	3570	144	15	39	74	7	8	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0002	3570	94	3	11	67	0	13	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/1	c0003	3570	44	14	13	2	4	10	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0004	3570	15	13	2	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0005	3570	8	6	2	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0006	3570	6	0	1	0	1	4	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0007	3570	6	0	0	0	0	6	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0008	3570	6	6	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0009	3570	6	6	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0010	3570	5	5	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0011	3570	5	0	0	5	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0012	3570	5	5	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0013	3570	5	0	5	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0014	3570	4	4	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0015	3570	4	0	1	0	3	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0016	3570	3	1	1	0	1	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0017	3570	3	1	2	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0018	3570	3	3	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0019	3570	3	3	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0020	3570	2	0	0	2	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0021	3570	2	0	1	0	0	1	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0022	3570	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0023	3570	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0024	3570	2	2	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0025	3570	2	0	0	0	2	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0026	3570	1	0	0	1	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0027	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010
HR_chr8_22109419_22136010	0/0	c0028	3570	1	1	0	0	0	0	copy fasta	HR	chr8	22109419	22136010